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Table 3 Primer sequences used for sequencing 3′ and 5′ NCRs of H3N8 EIV

From: An efficient genome sequencing method for equine influenza [H3N8] virus reveals a new polymorphism in the PA-X protein

Primer

Primer sequence

Universal 3′

5′-CCTTGTTTCTACTAGC-3′

Universal 5′

5′-CCTGCTTTTGCTAGT-3′

PB2 3′

5′-GG G TATTTCATTGCCATCATCC-3′

PB2 5′

5′-GACTCTAGCATACTTACTGACAG-3′

PB1 3′

5′-GAC A GT A TCCATGGTGTATCCTGT-3′

PB1 5′

5′-G T ATGGT T GAGGCCATGGTGTC C-3′

PA 3′

5′-A T C CCTGTGATTTCAAATCTTTCTTC-3′

PA 5′

5′-GA A TGCCTGATTAATGATCCCTG-3′

HA 3′

5′-A AT GTTCC A TTTG CT ACTGCATG-3′

HA 5′

5′-GGATTTC A TT C GCCATATCATG-3′

NP 3′

5′-TCAAA T GC C GA A AG T-3′

NP 5′

5′-CCGATCGTGCC T TC C TTTGACA T-3′

NA 3′

5′-GTGGAGTAGATCATAAAATTGCC-3′

NA 5′

5′-CAGACCTGTTTCATTGTTATTGAG-3′

M 3′

5′-A T AAAGCGTCTACGCTGCAGTCC-3′

M 5′

5′-AAAGAGGGCCTTCTACGGAAGG-3′

NS 3′

5′-C C GT A TTATCATTCCATT T AAG-3′

NS 5′

5′-TGATAA T ACG GTTA GAA TCTCT-3′

  1. Sequences from de Wit et al., [20] shown in italics with specific individual nucleotide changes in bold text, plus novel primer sequences for the N8 NA segment.