Skip to main content

Table 5 The orthopoxvirus (OPV) strains used in the study

From: Molecular characterization and phylogenetics of Fennoscandian cowpox virus isolates based on the p4c and atip genes

Virus species

Species abbreviation

Strain

ATI phenotypee

GenBank accession number

Camelpox virus

CMPV

CMS

V0

AY009089

  

M-96

V0

NC_003391

Cowpox virus

CPXV

No-H1

V+

This study

No-F1

V+

This study

  

No-F2

V+

This study

  

Swe-H1

V+

This study

  

Swe-H2

V+

This study

  

FIN/T2000

V+

This study

No-H2#

V+/

HQ680373

  

NOR1994_MAN*

V+

HQ420899

FIN2000_MAN*

V+

HQ420893

Brighton Red

V

NC_003663

  

GER 91-3

V+

DQ437593

  

GRI-90

V+

X94355

GER1990_2

V+

HQ420896

FRA2001_NANCY

V+

HQ420894

UK2000_K2984

V+

HQ420900

AUS1999_867

V+

HQ407377

GER1990_EP4

V+

HQ420895

GER1998_2

V+

HQ420897

GER2002_MKY

V+

HQ420898

Ectromelia virus

ECTV

Moscow

V

NC_004105

  

Naval

V

-

Monkeypox virus

MPXV

Zaire

V0

NC_03310

  

Congo

V0

DQ011154

  

USA_039

V0

DQ011157

  

Liberia

V0

DQ011156

Taterapox virus

TATV

DAH68

V0

NC_008291

Horsepox virus

HSPV

MNR76

V0

DQ792504

Vaccinia virus

VACV

CVA

V0

AM501482

  

Lister

V0

AY678276

  

Acambis

V0

AY313847

  

Western Reserve

V0

NC_006998

Variola virus

VARV

Niger_1969

V0

DQ441434

  

Benin_1968

V0

DQ441416

  

Brazil_1966

V0

DQ441419

  

UNK_1952

V0

DQ441447

  1. eThe ATI phenotypes of Fennoscandian CPXVs, CPXV-BR, ECTV-MOS were determined by electon microscopy as outlined in Methods while that of other OPVs were predicted based on the presence of full length atip and p4c genes. Strains that do not produce ATI were labelled V0. The V+ has virions embedded with the ATI matrix while the V has no virions within or on the surface of the ATI matrix. The V+/ ATI have virions encrusted on the surface but not internalized within the matrix. #The V+/ ATI of CPXV-No-H2 was demonstrated in our previous report[33]. *CPXV_NOR1994_MAN and CPXV_FIN2000_MAN are clones of CPXV-No-H1 and CPXV-FIN/T2000 whose genomes are fully sequenced[20]. ECTV-NAV has not been assigned a GenBank accession number but its genome sequence is available at http://www.poxvirus.org.