Clustersc | | | | | | | |
|---|
| | CPXV1 | CPXV2 | CPXV3 | CPXV4 | CPXV5 | CPXV6 | VACV |
|---|
CPXV 1 | | | | | | | |
CPXV 2 | 0.027 (0.023) | | | | | | |
CPXV 3 | 0.026 (0.022) | 0.017 (0.015) | | | | | |
CPXV 4 | 0.028 (0.024) | 0.018 (0.016) | 0.016 (0.013) | | | | |
CPXV 5 | 0.036 (0.032) | 0.033 (0.030) | 0.032 (0.025) | 0.034 (0.025) | | | |
CPXV 6 | 0.061 (0.049) | 0.058 (0.047) | 0.057 (0.040) | 0.059 (0.044) | 0.038 (0.032) | | |
VACV | 0.067 (0.046) | 0.064 (0.042) | 0.063 (0.037) | 0.065 (0.039) | 0.044 (0.029) | 0.026 (0.022) | |
- cPatristic distance of the Maximum Likelihood (ML) tree and the genetic distance without reference to a tree were generated as described in the Methods. Distances (patristic and genetic) were averaged across taxa to produce a value for each node. CPXVs belonging to the same cluster have distance values less than TATV-CMLV threshold, while CPXVs belonging to different cluster have distance values equal or more than the TATV-CMLV threshold. TATV-CMLV patristic distance threshold is 0.013 while its genetic distance threshold is also 0.013. CPXV 1 (CPXV_NOR1994_MAN, CPXV-No-H1, CPXV-NoF1, CPXV-No-F2); CPXV 2 (CPXV-BR, CPXV_UK2000_K2984); CPXV 3 (CPXV_GER 1998_2, CPXV_GER2002_MKY, CPXV_GER1980_EP4, CPXV_GER1990_2, CPXV-Swe-H2, CPXV-Swe-H1); CPXV 4 (CPXV_FRA_NANCY); CPXV 5 (CPXV_GER 91–3); CPXV 6 (CPXV-FIN/T2000, CPXV_FIN2000_MAN, CPXV_GRI_90, CPXV_AUS1999_867); VACV (VACV-WR, VACV-Acambis, VACV-lister, VACV-CVA).
