Skip to main content

Advertisement

Table 1 Comparison of nucleotide sequence percentage identity for Gez3.1 of Tomato leaf curl Sudan virus (ToLCSDV-Sha[SD:Gez3.1:11]) and other five recognized strains* of the ToLCSDV using Species Demarcation Tool (SDT v1.0)[19]

From: Molecular characterization of a naturally occurring intraspecific recombinant begomovirus with close relatives widespread in southern Arabia

Virus Full-length ORF IR Rep binding iteron Iteron-related domain
[GenBank accession] V1 V2 C2 C3 C1 C4
ToLCSDV 94 99 99 98 98 89 89 71 GGTGTAGTGGGGT FKIN
[AY044139]
ToLCSDV 96 97 93 95 94 99 100 99 GGTGTATCGGTAC FQIN
[AY044137]
ToLCSDV 92 97 93 87 88 89 87 86 TGTATATCGGTAC FQIN
[JF919733]
ToLCSDV 91 95 91 86 90 89 89 86 TGTATATCGGTAC FQIN
[JF919731]
ToLCSDV 92 97 93 86 87 90 87 81 GGTACATCGGTAC FQIY
[JN591385]
TYLCV 88 70 97 95 93 91 88 85 TGTATATCGGTAC FQIN
[AY044138]
  1. *Different isolates of ToLCSDV from Gezira (AY044139), Shambat (AY044137), Yemen tomato (JF919731) and Yemen tobacco (JF919733) and Tomato yellow leaf curl virus from Gezira, Sudan (TYLCV). Comparisons are based on the complete genome sequence, and the nucleotide sequence of each individual open reading frame (ORF) (V1, V2, C1, C2, C3, C4) and the intergenic region (IR). The Rep-binding iteron and iteron-related domain for ToLCSDV-Sha[SD:Gez3.1:11] are identical to those for ToLCSDV-Sha[SD:Sha:96] strain (AY044137). Values in bold highlight the highest nucleotide sequence identities with ToLCSDV-Gez3.1 for each ORF or IR compared.