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Table 1 Percent identity comparison of nucleotide and amino acid sequences for isolates from 2003 (JQ837913), 2010 (JQ837914) and prototype CVA-9 sequence (D00627)

From: Genetic characterization of a Coxsackie A9 virus associated with aseptic meningitis in Alberta, Canada in 2010

 

2003 Vs 2010

2003 Vs Prototype CVA-9

2010 Vs Prototype CVA-9

Gene fragment

Nucleotide

Amino acid

Nucleotide

Amino acid

Nucleotide

Amino acid

5’NCR

96.5

N/A

84.93

N/A

85.5

N/A

VP4

92.65

94.29

79.9

94.12

77.94

94.12

VP2

94.76

94.03

80.95

88.85

80.95

89.23

VP3

95.24

97.51

81.37

98.74

81.65

98.32

VP1

94.92

95.47

82

93.38

81.24

92.05

2A Protease

96.15

97.31

77.78

93.88

79.14

95.24

2B Protein

93.6

83.33

79.46

91.92

80.47

96.97

2C Helicase

82.19

92.96

82.07

97.26

80.87

96.35

3A protein

81.34

93.48

73.03

91.01

74.63

89.89

3B Protein (VPg)

74.63

86.36

79.1

90.91

70.15

86.36

3C Protease

77.78

91.62

81.75

97.27

79.02

95.63

3D Protein (Pol)

80.19

92.09

76.81

96.32

73.69

95.89