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Table 1 Primer sets designed for RT-LAMP assay detection of TBEV in this study

From: Development of simple and rapid assay to detect viral RNA of tick-borne encephalitis virus by reverse transcription-loop-mediated isothermal amplification

Primer

Sequence

Genome position*

Length (bp)

TBEV-F3

ACCATAAATGCCGACTGTGA

3319–3338

20

TBEV-B3

TGCCACCACCATTGAGC

3500–3516

17

TBEV-FIP

CGGCAGCACCACTCTGGAATTCGGGGGCTTCTGTGAGGA

3345–3361

39

3385–3404

TBEV-BIP

TGCACACTACCTCCAGTGACGTGAATTCATGAACAGGACGTATTTCC

3409–3430

47

3462–3480

TBEV-LF

ACCTTGCCACTCTCTGTGG

3365–3383

19

TBEV-LB

ACGGGGACAGACTGTTGGTATGC

3436–3485

23

FE-F3

TTGACCTTGCTCAGACTGTC

1547–1566

20

FE-B3

CGTCCATTTTCACAGCGTGT

1713–1732

20

FE-FIP

TGAACCAGTCCCGGTGGACCTTGGAGCTTGACAAGACCTC

1569–1589

40

1615–1633

FE-BIP

GCCCTGCCGTGGAAACATGAGGAGCTCCAAACTCAACCA

1642–1663

39

1694–1710

FE-LF

CAGGCCGTCGGTAGGTGTTC

1591–1610

20

FE-LB

GGGAGCACAAAACTGGAACA

1662–1681

20

Sib-F3

CCACTCTGGCTGAAGAACAT

1211–1230

20

Sib-B3

ATTGGCGGCAACGTAGTC

1417–1434

18

Sib-FIP

GCCCTTTCCAAACAGTCCGCAAGCACGGTGTGCAAGAGAG

1240–1255

40

1285–1305

Sib-BIP

TGAGGCAAAGAAGAAGGCCACTCGTGTGTGGCTCAACCTTA

1335–1356

41

1395–1413

Sib-LF

CCCAGCCTCGATCACTCTGGT

1256–1276

21

Sib-LB

GGACATGTGTATGACGCCAACAAG

1357–1380

24

EU-F3

CGCAAAACTGGAATAACGCA

1667–1686

20

EU-B3

CCACTTCGCAGGTCACATG

1831–1849

19

EU-FIP

ACTCCAGTCTGGTCTCCGAGGACTGGTTGAATTTGGGGCTC

1691–1711

41

1741–1760

EU-BIP

GTTACTGAAGGCTCTCGCTGGGGCCACTCTTCAGGTGGTACT

1761–1783

42

1811–1829

EU-LF

ACACGTCCATCTTGACAGCGT

1715–1735

21

EU-LB

GTTCCTGTGGCACACATTGA

1783–1802

20

  1. *genome position is based on the sequence of Neudoerf strain (accession no. TEU27495).