Virus | Virus abbreviation | Strain/Reference | Pan-flavi assay | RT-PCR * |
---|---|---|---|---|
 | Ct value | Confirmation by gel | ||
Flaviviridae | Â | Â | Â | Â |
 St. Louis Encephalitis virus | SLEV | ATCC VR-1265 | 22.19 | N.d. |
 Usutu virus | USUV | AY453411 | 22.48 | N.d. |
 Kunjin virus | KUNV | PI.France | 24.97 | N.d. |
 Kedougou virus | KEDV | ArD 14701 | 29.62 | Positive |
 Koutango virus | KOUV | AnD 5443 | 30.29 | Positive |
 Spondweni virus | SPOV | SA Ar 94 | 26.02 | Negative |
 Uganda S virus | UGSV | ArD 109325 | 29.48 | Positive |
 Wesselsbron | WESSV | ArB 4177 | 24.73 | Positive |
 Zika virus | ZIKV | PI, Senegal | 22.45 | Positive |
 Sepik virus | SEPV | MK 7148 | 16.77 | Positive |
 Dakar bat virus | DBV | AnD 249 | 32.57 | Positive |
 Yaounade virus | YAOV | ArY 276/68 | 17.52 | Positive |
 Bouboui virus | BOUV | ArB 490 | 31.88 | Negative |
 Saboya virus | SABV | AnD 4600 | 27.50 | Negative |
 Nounane virus# | NOUV | B3 isolate | No ct | N.d. |
Bunya viridae | Â | Â | Â | Â |
 Rift valley fever virus | RVFV | RKI | No ct | N.d. |
Togaviridae | Â | Â | Â | Â |
 Chikungunya virus |  | LR 2006 | No ct | N.d. |
 Chikungunya virus |  | ST05,African isolate | No ct | N.d. |
 Sindbis virus |  | RKI | No ct | N.d. |
Influneza virus | Â | Â | Â | Â |
 H1N1 Hamburg |  | A/Hamburg/04/2009 H1N1 | No ct | N.d. |
 H1N1 California |  | A/California/04/2009 H1N1 | No ct | N.d. |
 H5N1 |  | A/dk/Germany R603/06 H5N1 | No ct | N.d. |