Skip to main content

Table 2 Codon usage in EIAV genomes and its hosts

From: Comprehensive analysis of the overall codon usage patterns in equine infectious anemia virus

AA Codon RSCU AA Codon RSCU
EIAV Horse Donkey EIAV Horse Donkey
Phe UUU 1.48 0.82 0.89 Cys UGU 1.50 0.90 0.62
UUC 0.52 1.18 1.11 UGC 0.50 1.10 1.38
Asn AAU 1.50 0.84 0.66 Arg CGU 0.17 0.36 0.48
AAC 0.50 1.16 1.34 CGC 0.18 1.14 0.78
Lys AAA 1.54 0.80 0.78 CGA 0.20 0.60 0.72
AAG 0.46 1.20 1.22 CGG 0.31 1.08 0.60
Leu UUA 2.19
2.06
0.30 0.24 AGA 3.09 1.30 1.50
UUG 1.29 0.70 0.84 AGG 2.05 1.34 1.86
CUU 0.58 0.74 0.78 Ser UCU 1.42 1.08 1.08
CUC 0.46 1.32 1.62 UCC 0.73 1.44 1.44
CUA 0.85 0.36 0.18 UCA 1.41 0.78 0.84
CUG 0.62 2.58 2.34 UCG 0.12 0.48 0.24
Pro CCU 2.04 1.20 0.84 AGU 1.71 0.84 1.08
CCC 0.40 1.28 1.60 AGC 0.61 1.50 1.26
CCA 1.44 0.96 1.04 Asp GAU 1.35 0.84 0.87
CCG 0.12 0.44 0.52 GAC 0.65 1.16 1.13
Thr ACU 1.62 0.92 0.84 Glu GAA 1.25 0.76 0.84
ACC 0.42 1.60 1.76 GAG 0.75 1.24 1.16
ACA 1.79 0.96 0.80 His CAU 1.45 0.80 0.88
ACG 0.17 0.52 0.60 CAC 0.55 1.20 1.12
Val GUU 0.74 0.60 0.64 Gln CAA 1.28 0.52 0.84
GUC 0.37 1.08 1.40 CAG 0.72 1.48 1.16
GUA 1.96 0.36 0.28 Gly GGU 0.64 0.64 0.88
GUG 0.93 1.96 1.64 GGC 0.38 1.44 1.44
Ala GCU 1.72 1.08 1.20 GGA 2.05 0.94 0.82
GCC 0.44 1.72 1.76 GGG 0.92 0.98 0.86
GCA 1.60 0.76 0.76 Ile AUU 1.04 0.93 0.57
GCG 0.24 0.44 0.28 AUC 0.45 1.65 1.95
Tyr UAU 1.45 0.76 0.64 AUA 1.51 0.52 0.48
UAC 0.55 1.24 1.36