Comprehensive analysis of the overall codon usage patterns in equine infectious anemia virus

Table 2 Codon usage in EIAV genomes and its hosts

AA	Codon	RSCU			AA	Codon	RSCU
AA	Codon	EIAV	Horse	Donkey	AA	Codon	EIAV	Horse	Donkey
Phe	UUU	1.48	0.82	0.89	Cys	UGU	1.50	0.90	0.62
Phe	UUC	0.52	1.18	1.11	Cys	UGC	0.50	1.10	1.38
Asn	AAU	1.50	0.84	0.66	Arg	CGU	0.17	0.36	0.48
Asn	AAC	0.50	1.16	1.34		CGC	0.18	1.14	0.78
Lys	AAA	1.54	0.80	0.78		CGA	0.20	0.60	0.72
Lys	AAG	0.46	1.20	1.22		CGG	0.31	1.08	0.60
Leu	UUA	2.19 2.06	0.30	0.24		AGA	3.09	1.30	1.50
	UUG	1.29	0.70	0.84		AGG	2.05	1.34	1.86
	CUU	0.58	0.74	0.78	Ser	UCU	1.42	1.08	1.08
	CUC	0.46	1.32	1.62		UCC	0.73	1.44	1.44
	CUA	0.85	0.36	0.18		UCA	1.41	0.78	0.84
	CUG	0.62	2.58	2.34		UCG	0.12	0.48	0.24
Pro	CCU	2.04	1.20	0.84		AGU	1.71	0.84	1.08
	CCC	0.40	1.28	1.60		AGC	0.61	1.50	1.26
	CCA	1.44	0.96	1.04	Asp	GAU	1.35	0.84	0.87
	CCG	0.12	0.44	0.52	Asp	GAC	0.65	1.16	1.13
Thr	ACU	1.62	0.92	0.84	Glu	GAA	1.25	0.76	0.84
	ACC	0.42	1.60	1.76	Glu	GAG	0.75	1.24	1.16
	ACA	1.79	0.96	0.80	His	CAU	1.45	0.80	0.88
	ACG	0.17	0.52	0.60	His	CAC	0.55	1.20	1.12
Val	GUU	0.74	0.60	0.64	Gln	CAA	1.28	0.52	0.84
	GUC	0.37	1.08	1.40	Gln	CAG	0.72	1.48	1.16
	GUA	1.96	0.36	0.28	Gly	GGU	0.64	0.64	0.88
	GUG	0.93	1.96	1.64		GGC	0.38	1.44	1.44
Ala	GCU	1.72	1.08	1.20		GGA	2.05	0.94	0.82
	GCC	0.44	1.72	1.76		GGG	0.92	0.98	0.86
	GCA	1.60	0.76	0.76	Ile	AUU	1.04	0.93	0.57
	GCG	0.24	0.44	0.28		AUC	0.45	1.65	1.95
Tyr	UAU	1.45	0.76	0.64		AUA	1.51	0.52	0.48
Tyr	UAC	0.55	1.24	1.36