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Table 1 Amplification and sequencing primers for HCV NS5A and NS5B in genotypes 1a and 1b

From: Naturally occurring resistance mutations to inhibitors of HCV NS5A region and NS5B polymerase in DAA treatment-naïve patients

Gene

Primer name

Primer sequence

GT1a* NS5A

HCV-1a NS5A Fwd out

GACATCTGGGACTGGATATGYGA

 

HCV-1a NS5A Rew out

GTCCAGGWRTARGACATYGAGCA

 

HCV-1a NS5A Fwd inn

GATATGYGAGGTGYTGAGCGA

 

HCV-1a NS5A Rew inn

GAGCARCACACGACRTCYTC

 

HCV-1a NS5A Rew Seq

AAGGAGTCCARRATCACCAC

 

HCV-1a NS5B Fwd out

GGAGCCKGGRGATCCRGATCTYAGC

GT1a* NS5B

HCV-1a NS5B Rew out

GTTGGGGAGGAGGTAGATGCCTA

 

HCV-1a NS5B Fwd inn

GAYGTCGTGTGCTGCTCRATGTC

 

HCV-1a NS5B Rew inn

GAGACACGCTGTGATAAATGTCTCCC

 

HCV-1a NS5B Fwd Seq

TCGTAAGCCAGCTCGYCTCATCG

 

HCV-1a NS5B Rew Seq

CCTATTGATTTCACCTGGAGAG

 

HCV-1b NS5A Fwd out

GGATYAAYGARGACTGYTCYAC

 

HCV-1b NS5A Rew out

GACCARGACCCGTCRCTGAGRT

 

HCV-1b NS5A Fwd inn

GGGAYTGGATATGCACGGT

GT1b § NS5A

HCV-1b NS5A Rew inn

GGCATGGAGGARTAYGAC

 

HCV-1b NS5A Fwd Seq

ARTTGTCTGCGCCTTCYYTGAAGG

 

HCV-1b NS5B Fwd out

CGYTGAGTCRTAYTCCTCCATGC

 

HCV-1b NS5B Rew out

GGGCRCGAGACASGCTGTGATA

 

HCV-1b NS5B Fwd inn

CTCAGYGACGGGTCYTGGTC

GT1b § NS5B

HCV-1b NS5B Rew inn

GCTGTGATATATGTCTCCCC

 

HCV-1b NS5B Fwd Seq2

TGGGRGTHCGYGTRTGCGAG

 

HCV-1b NS5B Rew Seq3

AGCATYGTGCAGTCCYGGAGC

  1. *Genotype 1a; §Genotype 1b.