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Table 2 Alignment of amino acid sequences in the highly polymorphic region (HPR) of the HE gene from selected low pathogenic infectious salmon anaemia virus (ISAV-HPR0) isolates worldwide
| Group | ISAV (GenBank Acc. No) | Predicted amino acid sequence1 | aa deleted |
|---|---|---|---|
| HPRO | Canada 980712 (AY46060) | TDV-JIRDAIPPQTFNTFNQPSTSVLSNIFISM-GVA | 0 |
| HPRO | U. K. NWM10 (FJ178189) | TDV-KIRDAIPPQLNQTFNTNQPSTSVLSNIFISM-GVA | 0 |
| HPRO | USA USA2004 (AY973194) | TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA | 0 |
| HPRO | Faroe Island FO/03/06 (HQ664993) | TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA | 0 |
| HPRO | Faroe Island FO/03b/07 (HQ664997) | TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA | 0 |
| HPRO | Faroe Island FO/08/07 (HQ664998) | TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA | 0 |
| HPRO | Faroe Island FO/01/06 (HQ664992) | TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA | 0 |
| HPRO | Faroe Island FO/01/08 (HQ664999) | TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA | 0 |
| HPRO | Faroe Island FO/01a/08 (HQ664994) | TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA | 0 |
| HPRO | Faroe Island FO/01b/07 (HQ664995) | TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA | 0 |
| HPRO | Scotland 1703/01/86 (AJ440971) | TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA | 0 |
| HPRO | Norway FM173/11 (JN711060) | TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA | 0 |
| HPRO | Norway H97/04 (DQ108604) | TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA | 0 |
| HPRO | Norway H138/08 (JN711063) | TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA | 0 |
| HPRO | Chile CGA/1059 (KC414113) | TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA | 0 |
| HPRO | Chile CGA/ID758 (KF019742) | TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA | 0 |
| HPRO | Scotland Scot157/08 (JN711096) | TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA | 0 |
| HPRO | Canada EF6-6 (AY646058) | TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA | 0 |
