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Table 2 Alignment of amino acid sequences in the highly polymorphic region (HPR) of the HE gene from selected low pathogenic infectious salmon anaemia virus (ISAV-HPR0) isolates worldwide

From: Infectious salmon anaemia virus (ISAV) in Chilean Atlantic salmon (Salmo salar) aquaculture: emergence of low pathogenic ISAV-HPR0 and re-emergence of virulent ISAV-HPR∆: HPR3 and HPR14

Group

ISAV (GenBank Acc. No)

Predicted amino acid sequence1

aa deleted

HPRO

Canada 980712 (AY46060)

TDV-JIRDAIPPQTFNTFNQPSTSVLSNIFISM-GVA

0

HPRO

U. K. NWM10 (FJ178189)

TDV-KIRDAIPPQLNQTFNTNQPSTSVLSNIFISM-GVA

0

HPRO

USA USA2004 (AY973194)

TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA

0

HPRO

Faroe Island FO/03/06 (HQ664993)

TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA

0

HPRO

Faroe Island FO/03b/07 (HQ664997)

TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA

0

HPRO

Faroe Island FO/08/07 (HQ664998)

TDV-KIRVDAIPPQLNQTFNTNQVEQPSTSVLSNIFISM-GVA

0

HPRO

Faroe Island FO/01/06 (HQ664992)

TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA

0

HPRO

Faroe Island FO/01/08 (HQ664999)

TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA

0

HPRO

Faroe Island FO/01a/08 (HQ664994)

TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA

0

HPRO

Faroe Island FO/01b/07 (HQ664995)

TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA

0

HPRO

Scotland 1703/01/86 (AJ440971)

TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA

0

HPRO

Norway FM173/11 (JN711060)

TDV-KIRVDAIPPQLNQTFNTNQVEQPANSVLSNIFISM-GVA

0

HPRO

Norway H97/04 (DQ108604)

TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA

0

HPRO

Norway H138/08 (JN711063)

TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA

0

HPRO

Chile CGA/1059 (KC414113)

TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA

0

HPRO

Chile CGA/ID758 (KF019742)

TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA

0

HPRO

Scotland Scot157/08 (JN711096)

TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA

0

HPRO

Canada EF6-6 (AY646058)

TDV-KIRVDAIPPQLNQTFNTNQVEQPATSVLSNIFISM-GVA

0

  1. 1The characteristic residue patterns representing the three different ISAV-HPR0 subgroups are in bold.