Table 3 Nucleotide sequence identity of the field strains using the complete coding region of the F-gene sequences (1–1662 nt)
Nucleotide sequence identity (%) | |||||||||
|---|---|---|---|---|---|---|---|---|---|
Strain name (genotype) | JP/Osaka/2440/69 | JP/Ibaraki/SM87/87 | JP/Ibaraki/SG106/99 | JP/Chiba/BY103/01 | JP/Chiba/BY7/02 | JP/Ibaraki/IS-5/02 | JP/Ibaraki/IS2/02 | JP/Fukushima/NYF-3/02 | JP/Miyagi/AGT/02 |
JP/Osaka/2440/69 (VIa) | 100.0 | 96.1 | 92.2 | 92.2 | 92.3 | 92.2 | 92.2 | 92.1 | 92.3 |
JP/Narashino/68 (VIa) | 100.0 | 95.5 | 91.4 | 91.4 | 91.4 | 91.4 | 91.4 | 91.2 | 91.4 |
JP/Chiba/69 (VIa) | 99.5 | 94.9 | 90.9 | 90.9 | 90.9 | 90.9 | 90.9 | 90.6 | 90.9 |
Lebanon/70 (VIa) | 99.2 | 95.9 | 90.8 | 90.8 | 90.8 | 90.8 | 90.8 | 90.5 | 90.8 |
Kuwait/256/68 (VIa) | 99.0 | 96.1 | 90.5 | 90.5 | 90.5 | 90.5 | 90.5 | 90.2 | 90.5 |
Israel/70 (VIa) | 98.7 | 95.9 | 90.8 | 90.8 | 90.8 | 90.8 | 90.8 | 90.5 | 90.8 |
Iraq/AG-68 (VIa) | 98.5 | 95.6 | 90.0 | 90.0 | 90.0 | 90.0 | 90.0 | 89.7 | 90.0 |
ASTR/74 (VIa) | 97.3 | 94.1 | 89.3 | 89.3 | 89.3 | 89.3 | 89.3 | 89.0 | 89.3 |
California/1083(Fontana)/71 (VI) | 96.8 | 94.8 | 91.9 | 91.9 | 91.9 | 91.9 | 91.9 | 91.8 | 91.9 |
NewYork/44407/84 (VIb) | 95.8 | 93.9 | 90.1 | 90.1 | 90.2 | 90.1 | 90.1 | 90.1 | 90.2 |
JP/Ibaraki/SM87/87 (VId) | 96.1 | 100.0 | 90.1 | 90.1 | 90.2 | 90.1 | 90.1 | 90.0 | 90.2 |
JP/Tochigi/85 (VId) | 95.5 | 100.0 | 88.0 | 88.0 | 88.0 | 88.0 | 88.0 | 87.7 | 88.0 |
JP/Ibaraki/85 (VId) | 96.2 | 99.9 | 90.1 | 90.1 | 90.2 | 90.1 | 90.1 | 90.0 | 90.2 |
Sweden/95 (VId) | 95.1 | 97.6 | 89.5 | 89.5 | 89.6 | 89.5 | 89.5 | 89.4 | 89.6 |
DK-1/95 (VId) | 94.6 | 97.3 | 87.4 | 87.4 | 87.4 | 87.4 | 87.4 | 87.1 | 87.4 |
CH-1/95 (VId) | 94.7 | 96.8 | 87.4 | 87.4 | 87.4 | 87.4 | 87.4 | 87.2 | 87.4 |
TW/99-154 (VId) | 94.9 | 96.3 | 88.0 | 88.0 | 88.0 | 88.0 | 88.0 | 88.2 | 88.0 |
Kr-102/89 (VIf) | 95.7 | 95.3 | 90.3 | 90.3 | 90.4 | 90.3 | 90.3 | 90.2 | 90.4 |
Zhj-2/86 (VIg) | 96.3 | 98.7 | 90.2 | 90.2 | 90.3 | 90.2 | 90.2 | 90.1 | 90.3 |
Sh-1/97 (VIg) | 95.8 | 98.3 | 89.8 | 89.8 | 89.9 | 89.8 | 89.8 | 89.7 | 89.9 |
JP/Ibaraki/SG106/99 (VIId) | 92.2 | 90.1 | 100.0 | 100.0 | 99.9 | 100.0 | 100.0 | 99.8 | 99.9 |
JP/Chiba/BY103/01 (VIId) | 92.2 | 90.1 | 100.0 | 100.0 | 99.9 | 100.0 | 100.0 | 99.8 | 99.9 |
JP/Chiba/BY7/02 (VIId) | 92.3 | 90.2 | 99.9 | 99.9 | 100.0 | 99.9 | 99.9 | 99.8 | 100.0 |
JP/Ibaraki/IS-5/02 (VIId) | 92.2 | 90.1 | 100.0 | 100.0 | 99.9 | 100.0 | 100.0 | 99.8 | 99.9 |
JP/Ibaraki/IS2/02 (VIId) | 92.2 | 90.1 | 100.0 | 100.0 | 99.9 | 100.0 | 100.0 | 99.8 | 99.9 |
JP/Fukushima/NYF-3/02 (VIId) | 92.1 | 90.0 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 100.0 | 99.8 |
JP/Miyagi/AGT/02 (VIId) | 92.3 | 90.2 | 99.9 | 99.9 | 100.0 | 99.9 | 99.9 | 99.8 | 100.0 |
JP/Ibaraki/00 (VIId) | 91.4 | 88.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 99.7 | 100.0 |
JP/Gunma/01 (VIId) | 91.4 | 88.0 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | 99.7 | 100.0 |
FJ-2/99 (VIId) | 91.7 | 88.2 | 98.7 | 98.7 | 98.7 | 98.7 | 98.7 | 98.4 | 98.7 |
GD/1/98/Go (VIId) | 93.1 | 91.0 | 98.5 | 98.5 | 98.6 | 98.5 | 98.5 | 98.4 | 98.6 |
JP/Tokyo/96 (VIId) | 92.0 | 88.5 | 98.4 | 98.4 | 98.4 | 98.4 | 98.4 | 98.1 | 98.4 |
JP/Ibaraki-ph/97 (VIId) | 92.0 | 88.5 | 98.4 | 98.4 | 98.4 | 98.4 | 98.4 | 98.1 | 98.4 |
GX-3/98 (VIId) | 92.9 | 90.0 | 98.3 | 98.3 | 98.3 | 98.3 | 98.3 | 97.9 | 98.3 |
TW/98-1 (VIId) | 91.8 | 88.4 | 98.2 | 98.2 | 98.2 | 98.2 | 98.2 | 97.9 | 98.2 |
TW/98-2 (VIId) | 91.5 | 88.2 | 98.2 | 98.2 | 98.2 | 98.2 | 98.2 | 97.9 | 98.2 |
XJ-2/97 (VIId) | 93.6 | 91.2 | 97.8 | 97.8 | 97.9 | 97.8 | 97.8 | 97.7 | 97.9 |