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Table 3 Nucleotide sequence identity of the field strains using the complete coding region of the F-gene sequences (1–1662 nt)

From: Molecular epidemiology of Newcastle disease virus isolates from vaccinated commercial poultry farms in non-epidemic areas of Japan

  Nucleotide sequence identity (%)
Strain name (genotype) JP/Osaka/2440/69 JP/Ibaraki/SM87/87 JP/Ibaraki/SG106/99 JP/Chiba/BY103/01 JP/Chiba/BY7/02 JP/Ibaraki/IS-5/02 JP/Ibaraki/IS2/02 JP/Fukushima/NYF-3/02 JP/Miyagi/AGT/02
JP/Osaka/2440/69 (VIa) 100.0 96.1 92.2 92.2 92.3 92.2 92.2 92.1 92.3
JP/Narashino/68 (VIa) 100.0 95.5 91.4 91.4 91.4 91.4 91.4 91.2 91.4
JP/Chiba/69 (VIa) 99.5 94.9 90.9 90.9 90.9 90.9 90.9 90.6 90.9
Lebanon/70 (VIa) 99.2 95.9 90.8 90.8 90.8 90.8 90.8 90.5 90.8
Kuwait/256/68 (VIa) 99.0 96.1 90.5 90.5 90.5 90.5 90.5 90.2 90.5
Israel/70 (VIa) 98.7 95.9 90.8 90.8 90.8 90.8 90.8 90.5 90.8
Iraq/AG-68 (VIa) 98.5 95.6 90.0 90.0 90.0 90.0 90.0 89.7 90.0
ASTR/74 (VIa) 97.3 94.1 89.3 89.3 89.3 89.3 89.3 89.0 89.3
California/1083(Fontana)/71 (VI) 96.8 94.8 91.9 91.9 91.9 91.9 91.9 91.8 91.9
NewYork/44407/84 (VIb) 95.8 93.9 90.1 90.1 90.2 90.1 90.1 90.1 90.2
JP/Ibaraki/SM87/87 (VId) 96.1 100.0 90.1 90.1 90.2 90.1 90.1 90.0 90.2
JP/Tochigi/85 (VId) 95.5 100.0 88.0 88.0 88.0 88.0 88.0 87.7 88.0
JP/Ibaraki/85 (VId) 96.2 99.9 90.1 90.1 90.2 90.1 90.1 90.0 90.2
Sweden/95 (VId) 95.1 97.6 89.5 89.5 89.6 89.5 89.5 89.4 89.6
DK-1/95 (VId) 94.6 97.3 87.4 87.4 87.4 87.4 87.4 87.1 87.4
CH-1/95 (VId) 94.7 96.8 87.4 87.4 87.4 87.4 87.4 87.2 87.4
TW/99-154 (VId) 94.9 96.3 88.0 88.0 88.0 88.0 88.0 88.2 88.0
Kr-102/89 (VIf) 95.7 95.3 90.3 90.3 90.4 90.3 90.3 90.2 90.4
Zhj-2/86 (VIg) 96.3 98.7 90.2 90.2 90.3 90.2 90.2 90.1 90.3
Sh-1/97 (VIg) 95.8 98.3 89.8 89.8 89.9 89.8 89.8 89.7 89.9
JP/Ibaraki/SG106/99 (VIId) 92.2 90.1 100.0 100.0 99.9 100.0 100.0 99.8 99.9
JP/Chiba/BY103/01 (VIId) 92.2 90.1 100.0 100.0 99.9 100.0 100.0 99.8 99.9
JP/Chiba/BY7/02 (VIId) 92.3 90.2 99.9 99.9 100.0 99.9 99.9 99.8 100.0
JP/Ibaraki/IS-5/02 (VIId) 92.2 90.1 100.0 100.0 99.9 100.0 100.0 99.8 99.9
JP/Ibaraki/IS2/02 (VIId) 92.2 90.1 100.0 100.0 99.9 100.0 100.0 99.8 99.9
JP/Fukushima/NYF-3/02 (VIId) 92.1 90.0 99.8 99.8 99.8 99.8 99.8 100.0 99.8
JP/Miyagi/AGT/02 (VIId) 92.3 90.2 99.9 99.9 100.0 99.9 99.9 99.8 100.0
JP/Ibaraki/00 (VIId) 91.4 88.0 100.0 100.0 100.0 100.0 100.0 99.7 100.0
JP/Gunma/01 (VIId) 91.4 88.0 100.0 100.0 100.0 100.0 100.0 99.7 100.0
FJ-2/99 (VIId) 91.7 88.2 98.7 98.7 98.7 98.7 98.7 98.4 98.7
GD/1/98/Go (VIId) 93.1 91.0 98.5 98.5 98.6 98.5 98.5 98.4 98.6
JP/Tokyo/96 (VIId) 92.0 88.5 98.4 98.4 98.4 98.4 98.4 98.1 98.4
JP/Ibaraki-ph/97 (VIId) 92.0 88.5 98.4 98.4 98.4 98.4 98.4 98.1 98.4
GX-3/98 (VIId) 92.9 90.0 98.3 98.3 98.3 98.3 98.3 97.9 98.3
TW/98-1 (VIId) 91.8 88.4 98.2 98.2 98.2 98.2 98.2 97.9 98.2
TW/98-2 (VIId) 91.5 88.2 98.2 98.2 98.2 98.2 98.2 97.9 98.2
XJ-2/97 (VIId) 93.6 91.2 97.8 97.8 97.9 97.8 97.8 97.7 97.9