Skip to main content

Table 3 Nucleotide sequence identity of the field strains using the complete coding region of the F-gene sequences (1–1662 nt)

From: Molecular epidemiology of Newcastle disease virus isolates from vaccinated commercial poultry farms in non-epidemic areas of Japan

 

Nucleotide sequence identity (%)

Strain name (genotype)

JP/Osaka/2440/69

JP/Ibaraki/SM87/87

JP/Ibaraki/SG106/99

JP/Chiba/BY103/01

JP/Chiba/BY7/02

JP/Ibaraki/IS-5/02

JP/Ibaraki/IS2/02

JP/Fukushima/NYF-3/02

JP/Miyagi/AGT/02

JP/Osaka/2440/69 (VIa)

100.0

96.1

92.2

92.2

92.3

92.2

92.2

92.1

92.3

JP/Narashino/68 (VIa)

100.0

95.5

91.4

91.4

91.4

91.4

91.4

91.2

91.4

JP/Chiba/69 (VIa)

99.5

94.9

90.9

90.9

90.9

90.9

90.9

90.6

90.9

Lebanon/70 (VIa)

99.2

95.9

90.8

90.8

90.8

90.8

90.8

90.5

90.8

Kuwait/256/68 (VIa)

99.0

96.1

90.5

90.5

90.5

90.5

90.5

90.2

90.5

Israel/70 (VIa)

98.7

95.9

90.8

90.8

90.8

90.8

90.8

90.5

90.8

Iraq/AG-68 (VIa)

98.5

95.6

90.0

90.0

90.0

90.0

90.0

89.7

90.0

ASTR/74 (VIa)

97.3

94.1

89.3

89.3

89.3

89.3

89.3

89.0

89.3

California/1083(Fontana)/71 (VI)

96.8

94.8

91.9

91.9

91.9

91.9

91.9

91.8

91.9

NewYork/44407/84 (VIb)

95.8

93.9

90.1

90.1

90.2

90.1

90.1

90.1

90.2

JP/Ibaraki/SM87/87 (VId)

96.1

100.0

90.1

90.1

90.2

90.1

90.1

90.0

90.2

JP/Tochigi/85 (VId)

95.5

100.0

88.0

88.0

88.0

88.0

88.0

87.7

88.0

JP/Ibaraki/85 (VId)

96.2

99.9

90.1

90.1

90.2

90.1

90.1

90.0

90.2

Sweden/95 (VId)

95.1

97.6

89.5

89.5

89.6

89.5

89.5

89.4

89.6

DK-1/95 (VId)

94.6

97.3

87.4

87.4

87.4

87.4

87.4

87.1

87.4

CH-1/95 (VId)

94.7

96.8

87.4

87.4

87.4

87.4

87.4

87.2

87.4

TW/99-154 (VId)

94.9

96.3

88.0

88.0

88.0

88.0

88.0

88.2

88.0

Kr-102/89 (VIf)

95.7

95.3

90.3

90.3

90.4

90.3

90.3

90.2

90.4

Zhj-2/86 (VIg)

96.3

98.7

90.2

90.2

90.3

90.2

90.2

90.1

90.3

Sh-1/97 (VIg)

95.8

98.3

89.8

89.8

89.9

89.8

89.8

89.7

89.9

JP/Ibaraki/SG106/99 (VIId)

92.2

90.1

100.0

100.0

99.9

100.0

100.0

99.8

99.9

JP/Chiba/BY103/01 (VIId)

92.2

90.1

100.0

100.0

99.9

100.0

100.0

99.8

99.9

JP/Chiba/BY7/02 (VIId)

92.3

90.2

99.9

99.9

100.0

99.9

99.9

99.8

100.0

JP/Ibaraki/IS-5/02 (VIId)

92.2

90.1

100.0

100.0

99.9

100.0

100.0

99.8

99.9

JP/Ibaraki/IS2/02 (VIId)

92.2

90.1

100.0

100.0

99.9

100.0

100.0

99.8

99.9

JP/Fukushima/NYF-3/02 (VIId)

92.1

90.0

99.8

99.8

99.8

99.8

99.8

100.0

99.8

JP/Miyagi/AGT/02 (VIId)

92.3

90.2

99.9

99.9

100.0

99.9

99.9

99.8

100.0

JP/Ibaraki/00 (VIId)

91.4

88.0

100.0

100.0

100.0

100.0

100.0

99.7

100.0

JP/Gunma/01 (VIId)

91.4

88.0

100.0

100.0

100.0

100.0

100.0

99.7

100.0

FJ-2/99 (VIId)

91.7

88.2

98.7

98.7

98.7

98.7

98.7

98.4

98.7

GD/1/98/Go (VIId)

93.1

91.0

98.5

98.5

98.6

98.5

98.5

98.4

98.6

JP/Tokyo/96 (VIId)

92.0

88.5

98.4

98.4

98.4

98.4

98.4

98.1

98.4

JP/Ibaraki-ph/97 (VIId)

92.0

88.5

98.4

98.4

98.4

98.4

98.4

98.1

98.4

GX-3/98 (VIId)

92.9

90.0

98.3

98.3

98.3

98.3

98.3

97.9

98.3

TW/98-1 (VIId)

91.8

88.4

98.2

98.2

98.2

98.2

98.2

97.9

98.2

TW/98-2 (VIId)

91.5

88.2

98.2

98.2

98.2

98.2

98.2

97.9

98.2

XJ-2/97 (VIId)

93.6

91.2

97.8

97.8

97.9

97.8

97.8

97.7

97.9