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Table 6 SFV Pol amino acid sequences for five animals with long-term infection from colony CA5

From: Horizontal acquisition and a broad biodistribution typify simian foamy virus infection in a cohort of Macaca fascicularis

  Amino acid position of SFV (Pol)
  Time Point* 781 788 790 795 797 799 801 802 813 821 829 847 853 856 857 865 866 870 902
  SFVmfa   N N K D K M E R A A G R V Q C S A S H
Detected sequence A      E   I     T    T    A T   
B        V   K   T    I    A    
C    H         T   K     A    Y
D      E   I   K   T       A T   
E   D      V   K   T       A    
F        V   K   T R      A T   
G    H       ·   T ·    R   A   T  
H    H R   R F     T · · · · · A · · ·
Macaque 028GCE 1 (F)       V   K   T R   I    A T   
2 (B)       V   K   T    I    A    
979BAC 1 (H)    R   R F     T       A    
2   H R    F K   T T      Y A T   
049JI 1 (H)   H R   R F     T       A    
2   H R   R F     T E K     T    
357GH 1 (G)   H         T     R   A   T  
2 (G)   H         T     R   A   T  
980BAC 1 (H)   H R   R F     T       A    
   2 (H)   H R   R F     T       A    
  1. Sequences are shown alongside the SFV M. fascicularis reference sequence, SFVmfa (Accession number AY686197) and the sequences identified in the colony (A-H) at the earliest time point. *, where appropriate, if the sequence is present elsewhere in the colony it is indicated in parentheses. The period between time points 1 and 2 is 67 months.