Analysis of whole genome sequences of 16 strains of rubella virus from the United States, 1961–2009

Abernathy, Emily; Chen, Min-hsin; Bera, Jayati; Shrivastava, Susmita; Kirkness, Ewen; Zheng, Qi; Bellini, William; Icenogle, Joseph

doi:10.1186/1743-422X-10-32

Virology Journal

Table 1 List of rubella viruses used in this study

From: Analysis of whole genome sequences of 16 strains of rubella virus from the United States, 1961–2009

Virus*	Genotype	Isolation site, year	Accession No.	Source^/ Reference	Passage^ History
NJ.USA/61	1a	New Jersey, USA, 1961	JN635281	ATCC	Vero 2
Brooklyn.NY.USA/98	1B	New York, USA, 1998	JN635282	Venezuela	Vero 4
LA.CA.USA/91	1C	California, USA, 1991	JN635283		Vero 3
TX.USA/98	1C	Texas, USA, 1998	JN635284		Vero 2
CA.USA/88	1D	California, USA, 1988	JN635285		AGMK 2, BSC 2, Vero 2
BarHarbor.ME.USA/08	1E	Maine, USA, 2008	JN635286	Cruise ship	Vero 3
Springfield.MA.USA/98	1E	Massachusetts, USA, 1998	JN635287	Ukraine	Vero 4
Pullman.WA.USA/08	1E	Washington, USA, 2008	JN635288	China	Vero 4
Boston.MA.USA/07	1 G	Massachusetts, USA, 2007	JN635289	Uganda	Vero 4
Lebanon.NH.USA/05	1 G	New Hampshire, USA, 2005	JN635290	Cote d’Ivoire	Vero 4
DalyCity.CA.USA/97	1j	California, USA, 1997	JN635291	Philippines	RK13 1, BSC 1, Vero 3
Kalamazoo.MI.USA/07	2B	Michigan, USA, 2007	JN635292		Vero 3
Seattle.WA.USA/00	2B	Washington, USA, 2000	JN635293	India	Vero 4
LA.CA.USA/08	2B	California, USA, 2008	JN635294	India	Vero 5
Eagen.MN.USA/09	2B	Minnesota, USA, 2009	JN635295		Vero 4
Bismarck.ND.USA/08	2B	North Dakota, USA, 2008	JN635296	India	Vero 3
F-Th_USA64	1a	Connecticut, USA, 1964	M15240	[9]	NA
ULR_GER84	1a	Leipzig, Germany, 1984	AF435865	[10]	NA
TO-W_JAP67	1a	Toyama, Japan, 1967	AB047330	[11]	NA
Matsue.JPN/68	1a	Matsue, Japan, 1968	AB222609	[12]	NA
Cba_ARG88	1B	Cordoba, Argentina, 1988	DQ085339	[9]	NA
Anim_MEX97	1C	Baja California, Mexico, 1997	DQ085341	[9]	NA
JC2_NZL91	1D	Auckland, New Zealand, 1991	DQ388281	[9]	NA
6423_ITA97	1E	Pavia, Italy, 1997	DQ085343	[9]	NA
GUZ_GER92	1 G	Stuttgart, Germany, 1992	DQ388280	[9]	NA
BR1-CN79	2A	Beijing, China, 1979	AY258322	[13]	NA
AN5_KOR96	2B	Seoul, South Korea, 1996	DQ085342	[9]	NA
I-11_ISR68	2B	Tel Aviv, Israel, 1968	DQ085338	[9]	NA
C4_RUS67	2C	Moscow, Russia, 1967	DQ388279	[9]	NA
C74_RUS97	2C	Moscow, Russia, 1997	DQ085340	[9]	NA

* The 16 new sequences are in bold.
^ The epidemiological link (source) and passage numbers of the 16 viruses are given when known.

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ISSN: 1743-422X

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