Table 2 HIV tropism prediction
Sample | FPR and RNA-based tropism | FPR and DNA-based tropism | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
FPR1 | FPR2 | FPR3 | Tropism* | FPR1 | FPR2 | FPR3 | Tropism* | Reported results$ | Viral load# | |
1 | (−) | (−) | 0.3 | X4 | 2.4 | 39.3 | 31.2 | X4 | X4 | 6.95 |
2 | 57.1 | 47.3 | 57.1 | R5 | 44.2 | 57.1 | 57.1 | R5 | R5 | 4.90 |
3 | 31 | 31 | 28.9 | R5 | 28.9 | 26.2 | 18.9 | R5 | R5 | 3.34 |
4 | 1.7 | 1.7 | 1.7 | X4 | 0.5 | 1.7 | 0.8 | X4 | X4 | 4.43 |
5 | (−) | (−) | 9 | R5 | 16.7 | 48.9 | 35.2 | R5 | R5 | 3.83 |
6 | (−) | (−) | 24.6 | R5 | 52.2 | (−) | 89.3 | R5 | R5 | 5.72 |
7 | 99.4 | 99.4 | 99.4 | R5 | (−) | 78.4 | 99.4 | R5 | R5 | 1.28 |
8 | 1.7 | 1.7 | 1.7 | X4 | 1.7 | 19.1 | 1.5 | X4 | X4 | 4.04 |
9 | 40.1 | 44.9 | 44.9 | R5 | 0.5 | 50.9 | 0.2 | X4 | X4 | 3.38 |
10 | 86.5 | 86.5 | 86.5 | R5 | 86.5 | 86.5 | 86.5 | R5 | R5 | 5.11 |
11 | (−) | 8.6 | 5.3 | X4 | 6.8 | 9.3 | 5.7 | X4 | X4 | 4.58 |
12 | 17.2 | 17.2 | 39.4 | R5 | 17.2 | 13.8 | 17.2 | R5 | R5 | 6.59 |
13 | 5.4 | 5.4 | 4.7 | X4 | 5 | 5 | 5 | X4 | X4 | 3.91 |
14 | 42.6 | 33.7 | 42.6 | R5 | 42.6 | 24.6 | 24.6 | R5 | R5 | 1.28 |
15 | 35.1 | 35.1 | 35.1 | R5 | 36.9 | 33.7 | 35.1 | R5 | R5 | 3.61 |
16 | 99.4 | (−) | 99.3 | R5 | 99.9 | 99.2 | 99.9 | R5 | R5 | 4.54 |
17 | 1.7 | 1.7 | 1.7 | X4 | 1.1 | 2.6 | 1.1 | X4 | X4 | 5.67 |
18 | 66 | 33.7 | 66 | R5 | (−) | 42.2 | 66 | R5 | R5 | 3.66 |
19 | 1.9 | 2.9 | 2.9 | X4 | 2.9 | (−) | 0.5 | X4 | X4 | 5.96 |
20 | (−) | 45.7 | 45.7 | R5 | (−) | 48.7 | (−) | R5 | R5 | 4.41 |
21 | 32.2 | 17.3 | 15.4 | R5 | 17.9 | 13.2 | 19.5 | R5 | R5 | 3.26 |
22 | (−) | (−) | 6.9 | R5 | 10.6 | (−) | 6.9 | R5 | R5 | 4.34 |
23 | 31.4 | 31.4 | 31.4 | R5 | (−) | 42.2 | (−) | R5 | R5 | 5.36 |
24 | 1.7 | 1.3 | (−) | X4 | 42.2 | 27.3 | 6.9 | R5 | X4 | 4.86 |
25 | 87.1 | 87.1 | 87.1 | R5 | 86.2 | (−) | (−) | R5 | R5 | 5.73 |
26 | 74.4 | (−) | (−) | R5 | 13.8 | 8.1 | 37.1 | R5 | R5 | 1.28 |
27 | 67.3 | 67.3 | 22.8 | R5 | 48.9 | 48.9 | (−) | R5 | R5 | 4.65 |
28 | (−) | 28.7 | (−) | R5 | 42.2 | (−) | 12.8 | R5 | R5 | 4.23 |
29 | 89.1 | 89.1 | 89.1 | R5 | 42.2 | 42.2 | (−) | R5 | R5 | 4.18 |
30 | 62.5 | 39.6 | 48.7 | R5 | 42.2 | (−) | (−) | R5 | R5 | 6.28 |
31 | (−) | 24.7 | (−) | R5 | 1.7 | 4.7 | 42.2 | X4 | X4 | 4.04 |
32 | 44.6 | (−) | 44.6 | R5 | 75.6 | 79.9 | 0.2 | X4 | X4 | 5.88 |
33 | 41.6 | 41.6 | 41.6 | R5 | 41.6 | 41.6 | 41.6 | R5 | R5 | 5.26 |
34 | 16.6 | 58.7 | 58.7 | R5 | 15.4 | 15.7 | (−) | R5 | R5 | 1.28 |
35 | 72.3 | 72.8 | 72.3 | R5 | 72.3 | 72.3 | (−) | R5 | R5 | 3.23 |
36 | 41.6 | 38.4 | (−) | R5 | 57.6 | (−) | (−) | R5 | R5 | 4.30 |
37 | (−) | 3.7 | (−) | X4 | 20.4 | 8.1 | 8.1 | R5 | X4 | 3.78 |
38 | 51.2 | 41.6 | 51.2 | R5 | 28.5 | 77.6 | 45.1 | R5 | R5 | 3.38 |
39 | 23.1 | 23.1 | 23.1 | R5 | 23.1 | 23.1 | 23.1 | R5 | R5 | 3.20 |
40 | 1.7 | 1.7 | 2.6 | X4 | 1.7 | 73.1 | 73.1 | X4 | X4 | 5.46 |
41 | (−) | (−) | 0.9 | X4 | 0.2 | 2.9 | 23.1 | X4 | X4 | 3.08 |
42 | 20.9 | 20.9 | 20.9 | R5 | 79.9 | 9.6 | (−) | R5 | R5 | 1.28 |
43 | 71.5 | 71.5 | 71.5 | R5 | 71.5 | 71.5 | 71.5 | R5 | R5 | 6.59 |