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Table 2 HIV tropism prediction

From: HIV-1 tropism: a comparison between RNA and proviral DNA in routine clinical samples from Chilean patients

Sample FPR and RNA-based tropism FPR and DNA-based tropism   
  FPR1 FPR2 FPR3 Tropism* FPR1 FPR2 FPR3 Tropism* Reported results$ Viral load#
1 (−) (−) 0.3 X4 2.4 39.3 31.2 X4 X4 6.95
2 57.1 47.3 57.1 R5 44.2 57.1 57.1 R5 R5 4.90
3 31 31 28.9 R5 28.9 26.2 18.9 R5 R5 3.34
4 1.7 1.7 1.7 X4 0.5 1.7 0.8 X4 X4 4.43
5 (−) (−) 9 R5 16.7 48.9 35.2 R5 R5 3.83
6 (−) (−) 24.6 R5 52.2 (−) 89.3 R5 R5 5.72
7 99.4 99.4 99.4 R5 (−) 78.4 99.4 R5 R5 1.28
8 1.7 1.7 1.7 X4 1.7 19.1 1.5 X4 X4 4.04
9 40.1 44.9 44.9 R5 0.5 50.9 0.2 X4 X4 3.38
10 86.5 86.5 86.5 R5 86.5 86.5 86.5 R5 R5 5.11
11 (−) 8.6 5.3 X4 6.8 9.3 5.7 X4 X4 4.58
12 17.2 17.2 39.4 R5 17.2 13.8 17.2 R5 R5 6.59
13 5.4 5.4 4.7 X4 5 5 5 X4 X4 3.91
14 42.6 33.7 42.6 R5 42.6 24.6 24.6 R5 R5 1.28
15 35.1 35.1 35.1 R5 36.9 33.7 35.1 R5 R5 3.61
16 99.4 (−) 99.3 R5 99.9 99.2 99.9 R5 R5 4.54
17 1.7 1.7 1.7 X4 1.1 2.6 1.1 X4 X4 5.67
18 66 33.7 66 R5 (−) 42.2 66 R5 R5 3.66
19 1.9 2.9 2.9 X4 2.9 (−) 0.5 X4 X4 5.96
20 (−) 45.7 45.7 R5 (−) 48.7 (−) R5 R5 4.41
21 32.2 17.3 15.4 R5 17.9 13.2 19.5 R5 R5 3.26
22 (−) (−) 6.9 R5 10.6 (−) 6.9 R5 R5 4.34
23 31.4 31.4 31.4 R5 (−) 42.2 (−) R5 R5 5.36
24 1.7 1.3 (−) X4 42.2 27.3 6.9 R5 X4 4.86
25 87.1 87.1 87.1 R5 86.2 (−) (−) R5 R5 5.73
26 74.4 (−) (−) R5 13.8 8.1 37.1 R5 R5 1.28
27 67.3 67.3 22.8 R5 48.9 48.9 (−) R5 R5 4.65
28 (−) 28.7 (−) R5 42.2 (−) 12.8 R5 R5 4.23
29 89.1 89.1 89.1 R5 42.2 42.2 (−) R5 R5 4.18
30 62.5 39.6 48.7 R5 42.2 (−) (−) R5 R5 6.28
31 (−) 24.7 (−) R5 1.7 4.7 42.2 X4 X4 4.04
32 44.6 (−) 44.6 R5 75.6 79.9 0.2 X4 X4 5.88
33 41.6 41.6 41.6 R5 41.6 41.6 41.6 R5 R5 5.26
34 16.6 58.7 58.7 R5 15.4 15.7 (−) R5 R5 1.28
35 72.3 72.8 72.3 R5 72.3 72.3 (−) R5 R5 3.23
36 41.6 38.4 (−) R5 57.6 (−) (−) R5 R5 4.30
37 (−) 3.7 (−) X4 20.4 8.1 8.1 R5 X4 3.78
38 51.2 41.6 51.2 R5 28.5 77.6 45.1 R5 R5 3.38
39 23.1 23.1 23.1 R5 23.1 23.1 23.1 R5 R5 3.20
40 1.7 1.7 2.6 X4 1.7 73.1 73.1 X4 X4 5.46
41 (−) (−) 0.9 X4 0.2 2.9 23.1 X4 X4 3.08
42 20.9 20.9 20.9 R5 79.9 9.6 (−) R5 R5 1.28
43 71.5 71.5 71.5 R5 71.5 71.5 71.5 R5 R5 6.59
  1. *Prediction based on the lowest FPR, $ Prediction based on the worst prognosis, #Log (copies/mL), (−) Data not obtained.