Distribution and genetic diversity of Southern rice black-streaked dwarf viru s in China

Table 2 Nucleotide (top right) and amino acid (bottom left) sequence identities (%) of outer CP genes among SRBSDV isolates from China

	FJYA4	CQFD1	AHDZ2	ZJWY1	ZJDY4	ZJDY2	YNFN1	JXNC135	JSXY1	HNCX1	HNCJ1	HBCY6	GZSD1	GXLC4	GDSX1
FJYA4		98.6	99.1	98.2	98.6	98.7	98.6	98	99.1	99.3	98.4	99.1	98.9	98.9	99.3
CQFD1	98.6		98.9	98	98.4	98.6	98.4	97.8	98.9	99.1	98.2	98.9	98.7	98.7	99.1
AHDZ2	99.1	98.9		98.6	98.9	99.1	98.9	98.4	99.5	99.6	98.7	99.5	99.3	99.3	99.6
ZJWY1	98.2	98	98.6		99.1	99.3	99.1	98.6	98.6	98.7	98.9	98.6	98.4	98.7	98.7
ZJDY4	98.6	98.4	98.9	99.1		99.6	99.5	98.9	98.9	99.1	99.3	98.9	98.7	99.1	99.1
ZJDY2	98.7	98.6	99.1	99.3	99.6		99.6	99.1	99.1	99.3	99.5	99.1	98.9	99.3	99.3
YNFN1	98.6	98.4	98.9	99.1	99.5	99.6		98.9	98.9	99.1	99.3	98.9	98.7	99.1	99.1
JXNC135	98.0	97.8	98.4	98.6	98.9	99.1	98.9		98.4	98.6	98.7	98.4	98.2	98.6	98.6
JSXY1	99.1	98.9	99.5	98.6	98.9	99.1	98.9	98.4		99.6	98.7	99.5	99.3	99.3	99.6
HNCX1	99.3	99.1	99.6	98.7	99.1	99.3	99.1	98.6	99.6		98.9	99.6	99.5	99.5	99.8
HNCJ1	98.4	98.2	98.7	98.9	99.3	99.5	99.3	98.7	98.7	98.9		98.7	98.6	98.9	98.9
HBCY6	99.1	98.9	99.5	98.6	98.9	99.1	98.9	98.4	99.5	99.6	98.7		99.3	99.3	99.6
GZSD1	98.9	98.7	99.3	98.4	98.7	98.9	98.7	98.2	99.3	99.5	98.6	99.3		99.1	99.5
GXLC4	98.9	98.7	99.3	98.7	99.1	99.3	99.1	98.6	99.3	99.5	98.9	99.3	99.1		99.5
GDSX1	99.3	99.1	99.6	98.7	99.1	99.3	99.1	98.6	99.6	99.8	98.9	99.6	99.5	99.5

FJYA4: Yongan, Fujian province; CQFD1: Fengdu, Chongqing province; AHDZ2: Dongzhi, Anhui province; ZJWY1: Wuyi, Zhejiang province. ZJDY4 and ZJDY2: Dongyang, Zhejiang province; YNFN1: Funing, Yunnan province; JXNC135: Nanchang, Jiangxi province; JSXY1: Xinyi, Jiangsu province; HNCX1: Chenxi, Hunan province; HNCJ1: Changjiang, Hainan province; HBCY6: Chongyang, Hubei province; GZSD1: Sandu, Guizhou province; GXLC4: Luocheng, Guangxi province; GDSX1: Suixi, Guangdong province. The number after abbreviation was the numbering of isolate samples. ZJDY4 and ZJDY2 isolates were from maize, and others were from rice.

ISSN: 1743-422X