Human rhinoviruses and enteroviruses in influenza-like illness in Latin America

Table 2 HRV-C clades 5’UTR phylogenetic analysis

Clade	% of Total HRV C samples	Genbank accession number	Country of collection	Year of collection	Strain identifyer	Reference
I	29	GQ223228	China	2007	N10	Huang et al. (2009) [17]
II	24	EF077280	USA	2003	NAT045	Kistler et al. (2007) [27]
III	18	AB683895	Phillipines	2011		Fuji et al. (2011) [6]
IV	29	JN990702	USA	2009	26	Lau et al. (2007) [28]

The 5’UTR phylogenetic tree enable us to define four clades of HRV-C serotype (in Figure 6). The percentage of HRV-C samples included in each clade is shown. For each clade, we included one previously published isolate that is most representative of each clade, which allowed placement of known isolates like the NAT045 isolate in clade HRV-C.II and the Antwerp HRV 98/99 isolate in clade HRV-C.IV to better understand the variability of the HRV-C strains and to compare to other typing proposals [29]. Each GenBank isolate accession number, country of collection and year of collection, strain identifier, and the reference manuscript are shown.

ISSN: 1743-422X