Genetic and biological characterisation of an avian-like H1N2 swine influenza virus generated by reassortment of circulating avian-like H1N1 and H3N2 subtypes in Denmark

Table 3 Percentage nucleotide identity between Danish subtypes for all 8 influenza A segments

*Gene segment*	*H1N2-13608 vs.*		*H1N2-12687 vs.*		*H1N2- 13608 vs.*	*Region compared*
*Gene segment*	H1N1	H3N2	H1N1	H3N2	H1N2-12687
PB2	93	93	94	94	95	709-2119
PB1	93	99	96	93	93	1-2267
PA	94	99	96	95	94	1-2151
HA	94	51	95	50	95	1-1701
NP	93	99	96	93	94	1-1497
NA	49	98	49	92	92	22-1380
M	96	99	98	96	96	1-971
NS	96	99	96	96	96	1-838

The percentage identity of nucleotide sequences were calculated with CLC DNA Workbench version 6.8.1. Highest matches are in bold.
H1N1: A/Swine/Denmark/14348lu3/2003(H1N1); H3N2: A/Swine/Denmark/14348 ns9/2003(H3N2); H1N2-12687: A/Swine/Denmark/12687/2003(H1N2); H1N2-13608: A/Swine/Denmark/13608/2004(H1N2).

ISSN: 1743-422X