Characterization of HIV-1 gag and nef in Cameroon: further evidence of extreme diversity at the origin of the HIV-1 group M epidemic

Tongo, Marcel; Martin, Darren P; Zembe, Lycias; Mpoudi-Ngole, Eitel; Williamson, Carolyn; Burgers, Wendy A

doi:10.1186/1743-422X-10-29

Virology Journal

Table 2 Clade distribution of HIV-1 in Cameroon

From: Characterization of HIV-1 gag and nef in Cameroon: further evidence of extreme diversity at the origin of the HIV-1 group M epidemic

Sample ID	*gag* gene	*nef* gene	Genotype
BS01	CRF02_AG	CRF02_AG	CRF02_AG
BS02	A-like^b	CRF02_AG	URF
BS03	G	G	G
BS04	G	ND^c	G ^a
BS05	CRF02_AG	ND^c	CRF02_AG ^a
BS06	CRF02_AG	CRF02_AG	CRF02_AG
BS09	CRF02_AG	A1	URF
BS10	A1	A1	A1
BS11	CRF02_AG	F	URF
BS12	G	G	G
BS13	CRF02_AG	A1	URF
BS14	CRF02_AG	CRF02_AG	CRF02_AG
BS16	CRF02_AG	CRF02_AG	CRF02_AG
BS18	ND^c	CRF02_AG	CRF02_AG ^a
BS19	CRF02_AG	CRF02_AG	CRF02_AG
BS20	ND^c	CRF02_AG	CRF02_AG ^a
BS21	CRF02_AG	CRF02_AG	CRF02_AG
BS22	CRF02_AG	CRF02_AG	CRF02_AG
BS23	CRF02_AG	CRF02_AG	CRF02_AG
BS24	CRF37_cpx	CRF37_cpx	CRF37_cpx
BS25	CRF02_AG	F	URF
BS26	CRF01_AE^b	CRF01_AE	CRF01_AE
BS27	CRF37_cpx^b	CRF37_cpx	CRF37_cpx
BS29	CRF02_AG	U^b	URF
BS30	D	D	D
BS31	ND^c	CRF02_AG	CRF02_AG ^a
BS32	CRF02_AG	CRF02_AG	CRF02_AG
BS35	ND^c	CRF11_cpx	CRF11_cpx ^a
BS38	CRF02_AG	CRF02_AG	CRF02_AG
BS39	CRF02_AG	CRF02_AG	CRF02_AG
BS40	CRF36_cpx	CRF36_cpx	CRF36_cpx
BS42	URF	CRF01_AE^b	URF
BS43	CRF02_AG	CRF02_AG	CRF02_AG
BS44	ND^c	CRF02_AG	CRF02_AG ^a
BS45	CRF02_AG	CRF02_AG	CRF02_AG
BS46	G	G	G
BS47	CRF02_AG	CRF02_AG	CRF02_AG
BS48	G	G	G
BS49	F2	F	F2
BS50	CRF02_AG	CRF02_AG	CRF02_AG
BS51	G	G	G
BS53	CRF02_AG	CRF02_AG	CRF02_AG
BS54	D	D	D
BS55	CRF02_AG	F	URF
BS56	CRF02_AG	CRF02_AG	CRF02_AG
BS57	CRF11_cpx^b	ND^c	CRF11_cpx ^a
BS64	CRF02_AG	CRF02_AG	CRF02_AG
BS65	CRF22_01A1	CRF01_AE	URF
BS66	CRF02_AG	CRF02_AG	CRF02_AG
BS71	CRF02_AG	CRF02_AG	CRF02_AG
BS72	CRF36_cpx^b/F2^b	CRF01/F	URF
BS73	CRF02_AG	CRF02_AG	CRF02_AG
BS74	ND^c	A-like^b	A-like ^a
BS75	CRF02_AG	CRF02_AG	CRF02_AG
BS77	CRF02_AG	CRF02_AG	CRF02_AG
BS78	ND^c	CRF01_AE	CRF01_AE ^a
BS79	ND^c	CRF02_AG	CRF02_AG ^a
BS81	CRF02_AG	ND^c	CRF02_AG ^a
BS82	ND^c	CRF02_AG	CRF02_AG ^a

^aGenotype was uncertain in samples for which only a single gene was determined.
^bOutlier; ^cND: Not done.

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ISSN: 1743-422X

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