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Table 2 Clade distribution of HIV-1 in Cameroon

From: Characterization of HIV-1 gag and nef in Cameroon: further evidence of extreme diversity at the origin of the HIV-1 group M epidemic

Sample ID gag gene nef gene Genotype
BS01 CRF02_AG CRF02_AG CRF02_AG
BS02 A-likeb CRF02_AG URF
BS03 G G G
BS04 G NDc G a
BS05 CRF02_AG NDc CRF02_AG a
BS06 CRF02_AG CRF02_AG CRF02_AG
BS09 CRF02_AG A1 URF
BS10 A1 A1 A1
BS11 CRF02_AG F URF
BS12 G G G
BS13 CRF02_AG A1 URF
BS14 CRF02_AG CRF02_AG CRF02_AG
BS16 CRF02_AG CRF02_AG CRF02_AG
BS18 NDc CRF02_AG CRF02_AG a
BS19 CRF02_AG CRF02_AG CRF02_AG
BS20 NDc CRF02_AG CRF02_AG a
BS21 CRF02_AG CRF02_AG CRF02_AG
BS22 CRF02_AG CRF02_AG CRF02_AG
BS23 CRF02_AG CRF02_AG CRF02_AG
BS24 CRF37_cpx CRF37_cpx CRF37_cpx
BS25 CRF02_AG F URF
BS26 CRF01_AEb CRF01_AE CRF01_AE
BS27 CRF37_cpxb CRF37_cpx CRF37_cpx
BS29 CRF02_AG Ub URF
BS30 D D D
BS31 NDc CRF02_AG CRF02_AG a
BS32 CRF02_AG CRF02_AG CRF02_AG
BS35 NDc CRF11_cpx CRF11_cpx a
BS38 CRF02_AG CRF02_AG CRF02_AG
BS39 CRF02_AG CRF02_AG CRF02_AG
BS40 CRF36_cpx CRF36_cpx CRF36_cpx
BS42 URF CRF01_AEb URF
BS43 CRF02_AG CRF02_AG CRF02_AG
BS44 NDc CRF02_AG CRF02_AG a
BS45 CRF02_AG CRF02_AG CRF02_AG
BS46 G G G
BS47 CRF02_AG CRF02_AG CRF02_AG
BS48 G G G
BS49 F2 F F2
BS50 CRF02_AG CRF02_AG CRF02_AG
BS51 G G G
BS53 CRF02_AG CRF02_AG CRF02_AG
BS54 D D D
BS55 CRF02_AG F URF
BS56 CRF02_AG CRF02_AG CRF02_AG
BS57 CRF11_cpxb NDc CRF11_cpx a
BS64 CRF02_AG CRF02_AG CRF02_AG
BS65 CRF22_01A1 CRF01_AE URF
BS66 CRF02_AG CRF02_AG CRF02_AG
BS71 CRF02_AG CRF02_AG CRF02_AG
BS72 CRF36_cpxb/F2b CRF01/F URF
BS73 CRF02_AG CRF02_AG CRF02_AG
BS74 NDc A-likeb A-like a
BS75 CRF02_AG CRF02_AG CRF02_AG
BS77 CRF02_AG CRF02_AG CRF02_AG
BS78 NDc CRF01_AE CRF01_AE a
BS79 NDc CRF02_AG CRF02_AG a
BS81 CRF02_AG NDc CRF02_AG a
BS82 NDc CRF02_AG CRF02_AG a
  1. aGenotype was uncertain in samples for which only a single gene was determined.
  2. bOutlier; cND: Not done.