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Table 2 Nucleotide and amino acid identities of the polyprotein gene sequences

From: Molecular and phylogenetic analysis of the porcine kobuvirus VP1 region using infected pigs from Sichuan Province, China

Strain Nucleotide identity (%)
CHN/SC/31 CHN/SC/32 CHN/SC/33 CHN/SC/34 CHN/SC/35 S-1-HUN Y-1-CHI SH-W-CHN WUH1 WB-1-HUN HNXX-4 CH/HZ/2011 XX
CHN/SC/31 98.3 97.5 85.1 86.7 87.8 87.8 84.4 86.1 84.7 85.2 82.8 84.0
CHN/SC/32 98.7 98.8 85.3 86.8 87.4 87.3 84.4 86.3 84.7 85.1 82.1 84.0
CHN/SC/33 98.2 98.7 85.7 87.3 87.2 87.6 84.4 86.5 84.8 85.3 82.5 84.4
CHN/SC/34 91.9 91.7 92.4 84.5 84.5 85.4 87.9 84.5 83.6 88.0 83.4 86.9
CHN/SC/35 95.7 95.2 95.5 90.7 87.2 87.9 84.5 86.3 85.1 83.4 82.2 83.7
S-1-HUN 95.7 95.7 95.5 91.4 95.5 86.0 84.3 86.9 86.6 83.4 84.4 84.8
Y-1-CHI 94.2 94.2 94.2 92.2 95.7 94.9 86.2 87.3 84.4 84.8 83.3 84.4
SH-W-CHN 89.9 89.6 89.9 93.9 88.9 88.6 89.6 84.5 82.8 86.5 84.0 86.4
WUH1 95.7 95.5 95.2 91.4 93.7 96.0 93.9 89.1 85.1 84.2 83.4 85.5
WB-1-HUN 92.4 92.2 91.9 89.9 90.7 93.4 91.9 87.1 93.7 83.0 81.1 84.5
HNXX-4 91.2 90.9 91.4 96.5 89.9 90.9 91.4 92.7 90.7 90.4 83.5 87.7
CH/HZ/2011 90.9 90.7 91.2 92.7 90.4 90.7 91.9 90.9 90.9 89.1 91.7 83.9
XX 90.4 90.2 90.4 94.4 88.9 90.2 89.9 91.9 91.7 90.2 93.9 90.9
Amino identity (%)
  1. The reference porcine kobuvirus used in the comparison and their accession numbers are as follows: S-1-HUN (EU787450), Y-1-CHI (GU292559), SH-W-CHN (JN630514), WUH1 (JQ692069), WB-1-HUN (JX177612), HNXX-4 (JX401523), CH/HZ/2011 (JX827598), XX (KC204684).