Table 2 Nucleotide and amino acid identities of the polyprotein gene sequences
Strain | Nucleotide identity (%) | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CHN/SC/31 | CHN/SC/32 | CHN/SC/33 | CHN/SC/34 | CHN/SC/35 | S-1-HUN | Y-1-CHI | SH-W-CHN | WUH1 | WB-1-HUN | HNXX-4 | CH/HZ/2011 | XX | |
CHN/SC/31 | — | 98.3 | 97.5 | 85.1 | 86.7 | 87.8 | 87.8 | 84.4 | 86.1 | 84.7 | 85.2 | 82.8 | 84.0 |
CHN/SC/32 | 98.7 | — | 98.8 | 85.3 | 86.8 | 87.4 | 87.3 | 84.4 | 86.3 | 84.7 | 85.1 | 82.1 | 84.0 |
CHN/SC/33 | 98.2 | 98.7 | — | 85.7 | 87.3 | 87.2 | 87.6 | 84.4 | 86.5 | 84.8 | 85.3 | 82.5 | 84.4 |
CHN/SC/34 | 91.9 | 91.7 | 92.4 | — | 84.5 | 84.5 | 85.4 | 87.9 | 84.5 | 83.6 | 88.0 | 83.4 | 86.9 |
CHN/SC/35 | 95.7 | 95.2 | 95.5 | 90.7 | — | 87.2 | 87.9 | 84.5 | 86.3 | 85.1 | 83.4 | 82.2 | 83.7 |
S-1-HUN | 95.7 | 95.7 | 95.5 | 91.4 | 95.5 | — | 86.0 | 84.3 | 86.9 | 86.6 | 83.4 | 84.4 | 84.8 |
Y-1-CHI | 94.2 | 94.2 | 94.2 | 92.2 | 95.7 | 94.9 | — | 86.2 | 87.3 | 84.4 | 84.8 | 83.3 | 84.4 |
SH-W-CHN | 89.9 | 89.6 | 89.9 | 93.9 | 88.9 | 88.6 | 89.6 | — | 84.5 | 82.8 | 86.5 | 84.0 | 86.4 |
WUH1 | 95.7 | 95.5 | 95.2 | 91.4 | 93.7 | 96.0 | 93.9 | 89.1 | — | 85.1 | 84.2 | 83.4 | 85.5 |
WB-1-HUN | 92.4 | 92.2 | 91.9 | 89.9 | 90.7 | 93.4 | 91.9 | 87.1 | 93.7 | — | 83.0 | 81.1 | 84.5 |
HNXX-4 | 91.2 | 90.9 | 91.4 | 96.5 | 89.9 | 90.9 | 91.4 | 92.7 | 90.7 | 90.4 | — | 83.5 | 87.7 |
CH/HZ/2011 | 90.9 | 90.7 | 91.2 | 92.7 | 90.4 | 90.7 | 91.9 | 90.9 | 90.9 | 89.1 | 91.7 | — | 83.9 |
XX | 90.4 | 90.2 | 90.4 | 94.4 | 88.9 | 90.2 | 89.9 | 91.9 | 91.7 | 90.2 | 93.9 | 90.9 | — |
Amino identity (%) | |||||||||||||