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Table 3 Percent nucleotide (nt) and deduced amino acid (aa) identities of the entire ORF, VP1 and 3Dpol genes of Sing-M105-02 compared to Sing-M100-02, other EMCV and The ilovirus strains (all members of the Cardiovirus genus)

From: A highly divergent Encephalomyocarditis virus isolated from nonhuman primates in Singapore

  

ORF

VP1

3Dpol

 

Virus strain

nt

aa

nt

aa

nt

aa

EMCV

Sing-M100-02

99.9

99.9

99.9

99.6

100.0

100.0

EMCV D (M22458)

75.2

86.3

73.6

86.3

78.4

88.9

EMCV B (M22457)

75.1

86.3

73.5

86.3

78.4

89.8

EMCV D (M37588)

75.3

86.4

73.5

86.3

78.6

89.8

EMCV PV2 (X87335)

75.3

86.4

73.4

85.9

78.6

89.8

EMCV G424-90 (AJ617362)

NA

73.3

85.2

NA

EMCV pEC9 (DQ288856)

75.5

86.6

73.3

87.0

79.2

88.9

EMCV BEL-288791 (AF356822)

75.6

86.7

73.2

86.6

79.2

89.8

EMCV CBNU (DQ517424)

75.6

86.7

73.2

86.3

79.2

88.7

EMCV GX0601 (FJ604852)

75.5

86.6

73.2

86.6

79.1

89.6

EMCV Mengo M (L22089)

75.5

86.6

73.2

87.0

78.6

88.7

EMCV Mengo Rz-pMwt (DQ294633)

75.5

86.6

73.2

87.0

78.6

89.8

EMCV pV21 (X74312)

75.5

86.5

73.2

86.3

79.3

89.6

EMCV GX0602 (FJ604853)

75.4

86.4

73.0

86.6

78.9

89.6

EMCV HB1 (DQ464063)

75.5

86.6

73.0

86.6

79.2

89.8

EMCV K11 (EU780149)

75.5

86.6

73.0

86.3

79.2

89.3

EMCV K3 (EU780148)

75.5

86.3

73.0

85.9

79.1

88.7

EMCV BJC3 (DQ464062)

75.5

86.6

72.9

86.3

79.2

89.8

EMCV GXLC (FJ897755)

75.5

86.4

72.9

85.2

79.0

89.8

EMCV R (M81861)

75.4

86.2

72.8

85.6

79.1

90.2

EMCV Ruckert (M81861)

75.4

86.2

72.8

85.6

79.1

89.6

EMCV MN-30 (AY296731)

75.1

86.4

72.4

86.6

78.6

89.8

EMCV 1086C (DQ835185)

74.6

86.9

71.8

87.0

76.4

88.7

EMCV C108-95 (AJ617359)

NA

71.1

87.0

NA

EMCV RD1338 (JX257003)

73.6

82.5

61.2

66.1

80.9

89.6

Theilovirus

SAFV-1 (EF165067).seq

56.7

53.6

77.4

88.6

60.8

53.5

SAFV-2 (AM922293).seq

57.1

54.0

75.0

85.9

57.5

52.8

TMEV BeAn 8386 (M16020).seq

57.3

54.8

75.3

83.9

58.5

51.0

TMEV BeAn 8386 S2 (DQ401688).seq

57.3

54.9

75.5

83.9

58.7

51.0

TMEV DA (M20301).seq

57.1

55.1

75.5

81.8

60.4

50.6

TMEV GDVII (M20562).seq

57.7

55.0

71.5

78.9

58.1

50.6

TMEV GDVII (X56019).seq

57.7

55.0

71.5

78.9

57.9

50.2

  1. The virus isolate names are shown followed by the GenBank accession number in brackets. The EMCV strains with the highest divergence from Sing-M105-02 and Sing-M100-02 are in bold.