Virology Journal

Table 1 Adaptation of ISAV genes to Salmo salar codon usage

From: Genomic adaptation of the ISA virus to Salmo salar codon usage

	CAI values of ISAV genes
ISA virus	PB2	PB1	NP	PA	F	HE	NSP1	NSP2	M1	M2
ISAV752	0.598	0.610	0.668	0.591	0.577	0.622	0.645	0.591	0.647	0.612
ISAV901	0.598	0.611	0.668	0.591	0.577	0.621	0.645	0.591	0.644	0.609
ISAV1	0.595	0.611	0.671	0.590	0.579	0.620	0.641	0.589	0.646	0.608
ISAV10	0.595	0.610	0.671	0.587	0.577	0.625	0.645	0.594	0.644	0.610
ISAV11	0.597	0.611	0.671	0.592	0.578	0.630	0.646	0.591	0.646	0.608
ISAV2	0.594	0.610	0.670	0.586	0.582	0.628	0.636	0.592	0.642	0.603
ISAV3	0.595	0.608	0.672	0.587	0.582	0.635	0.643	0.596	0.642	0.606
ISAV4	0.595	0.609	0.668	0.590	0.576	0.625	0.644	0.594	0.644	0.609
ISAV5	0.598	0.611	0.669	0.587	0.584	0.629	0.646	0.588	0.649	0.608
ISAV6	0.595	0.611	0.666	0.585	0.584	0.632	0.639	0.592	0.642	0.603
ISAV7	0.594	0.612	0.667	0.587	0.583	0.627	0.638	0.595	0.644	0.608
ISAV8	0.595	0.610	0.668	0.586	0.579	0.621	0.647	0.594	0.646	0.605
ISAV9	0.595	0.612	0.672	0.585	0.581	0.627	0.638	0.592	0.646	0.608
SK779	0.595	0.610	0.672	0.591	0.577	0.623	0.643	0.596	0.646	0.605
VIR22	0.596	0.611	0.670	0.587	0.582	0.623	0.638	0.592	0.646	0.608
VIR25	0.596	0.611	0.670	0.590	0.583	0.622	0.638	0.592	0.646	0.608
VIR28	0.590	0.611	0.668	0.587	0.581	0.630	0.640	0.592	0.642	0.603
ISAVNA	0.555	0.612	0.633	0.555	0.607	0.564	0.640	0.556	0.656	0.623

Higher and lower CAI values per segment are indicated in bold and underlined characters respectively.

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ISSN: 1743-422X

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