Table 1 Strains used for the comparative sequence analysis
From: Comparative full length genome sequence analysis of usutu virus isolates from Africa
Strain | Isolate name | Geographic origin | Year | Host | Accession number |
|---|---|---|---|---|---|
SouthAfrica_1959 | SAAR1776 | South Africa | 1959 | Cx. neavei | AY453412 |
CAR_1969* | ArB1803 | CAR | 1969 | Cx. perfuscus | KC754958 |
Kedougou_1974* | ArD19848 | Kedougou (Senegal) | 1974 | Cx. perfuscus | KC754954 |
CAR_1981* | HB81P08 | CAR | 1981 | Human | KC754955 |
Barkedji_1993* | ArD101291 | Barkedji (Senegal) | 1993 | Cx. gr. univittatus | KC754956 |
Vienna_2001 | Vienna_2001 | Vienna (Austria) | 2001 | Blackbird | AY453411 |
MeiseH_2002 | Â | Austria | 2002 | Blue tit | JQ219843 |
Neunkirchen_2003 | USU499-03 | Neunkirchen (Austria) | 2003 | Nuthatch | EF078296 |
Strasshof_2003 | USU450-03 | Strasshof (Austria) | 2003 | Great tit | EF078295 |
Stegersbach_2003 | USU502-03 | Stegersbach (Austria) | 2003 | Blackbird | EF078297 |
Vienna_2003 | USU281-03 | Vienna (Austria) | 2003 | Blackbird | EF078294 |
Biberbach_2004 | USU623-04 | Biberbach (Austria) | 2004 | Blackbird | EF078300 |
Graz_2004 | USU618-04 | Graz (Austria) | 2004 | Blackbird | EF078299 |
Klosterneuburg_2004 | USU338-04 | Klosterneuburg (Austria) | 2004 | Blackbird | EF078298 |
Budapest_2005 | Budapest | Budapest (Hungary) | 2005 | Blackbird | EF206350 |
Vienna_2005 | USU589-05 | Vienna (Austria) | 2005 | Blackbird | EF078301 |
USU588-05 | EF393679 | ||||
USU604-05 | EF393680 | ||||
USU629-05 | EF393681 | ||||
Zurich_2006 | Zurich 2006 | Zurich (Switzerland) | 2006 | Blackbird | JX473238 |
Barkedji_2007* | ArD192495 | Barkedji (Senegal) | 2007 | Cx. neavei | KC754957 |
Italy_2009 | Italia 2009 | Italy | 2009 | Cx. pipiens | JF266698 |
Blackbird | |||||
Piedmont_2009 | USU173_09 | Piedmont (Italy) | 2009 | Cx. pipiens | JN257983 |
USU181_09 | Â | Â | Â | JN257984 | |
Germany_2010 | 1477 | Germany | 2010 | Cx. pipiens | JF330418 |
Giarole_2010 | USU090_10 | Giarole (Italy) | 2010 | Cx. pipiens | JN257982 |
CzechRepublic_2011 | USUV-blackbird_Czechland_2011 | Czech Republic | 2011 | Blackbird | JX236666 |
Mannheim_2011 | BH65/11-02-03 | Mannheim (Germany) | 2011 | Blackbird | HE599647 |