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Table 3 Real-time polymerase chain reaction primers, gene targets and the corresponding Arabidopsis thaliana homologs

From: A remarkable synergistic effect at the transcriptomic level in peach fruits doubly infected by prunus necrotic ringspot virus and peach latent mosaic viroid

Protein

Locus name (Peach)

Arabidopsis thaliana homolog

% Homology

Forward primer (5´-3´)

Reverse primer (5´-3´)

Elongation factor 1-alpha (EF1-a)

ppa005718m.g

At5g60390

95.3

CCTTTGTCCCCATTTCTGGAT

CCTTTGTCCCCATTTCTGGAT

Full=F-box (F-BOX)

ppa005877m.g

At5g15710

84.6

CCTTTGTCCCCATTTCTGGAT

AGGATGAATTGCTTTGCCAAA

Clathrin adapter complex (CAC)

ppa005912m.g

At5g46630

90.9

CAAAATTCCTGTGCCAAAACAA

GCTCGACCCGAAGTCACTTG

Expansin (EXP8)

ppa010260m.g

At2g40610

78.7

TGGTGGGTGGTGCAATCC

AGAAAGCAGGCTCAGCCAAA

Phytoene synthas

ppa005962m.g

At5g17230

81.5

TGGGCCTAACGCCTCACA

TCTTCTAACCTCGACTCCCACCTA

Auxine response protein (IAA9)

ppa007194m.g

At5g65670

71.3

TGATTCATGCAAGAGGTTGAAGA

GCCCTAGGAGCTAAGCCAATG

Glutamate descarboxilase

ppa004796m.g

At5g17330

89.0

TGAAGGCTGCCGATGGA

TACTCTCAAGTGCCCTCGTCTCT

Cysteine proteinase

ppa004796m.g

At1g47128

80.3

CAACCATGGCGATTCTTTTTC

ATTGACATGTCCACGGCTGAT

Invertase/pectin methylesterase inhibitor family

ppa011831m.g

At5g62350

64.4

CCTGCCTTATGTGTCCACTCACT

AAACGTTTAGGGCTTGTTTGGAT

Glutamate deshydrogenase

ppa006458m.g

At5g07440

95.4

TCGATTCAGGGTTTGACATTTGT

GCTTCGCAGCCCATGTTC

Universal Stress Protein

ppa012560m.g

At3g53990

85.6

TCGGAATCGCCATGGATTT

CTCGATCGCCCATTTCAGA

CBL-interacting protein Kinase 6

ppa006023m.g

At4g30960

85.7

GCTTCACGGCCGTTACGAT

GTGGTACACCTTCGCGAATGT