Table 1 Alignment of the 0.3-kb fragment sequences among the gamma retroviruses
Name | Accession no. | 1st, 2nd, 3rd, 4th nucleotide | 5th nucleotide | 6th nucleotide | 7th nucelotide |
|---|---|---|---|---|---|
Murine leukemia virus | |||||
Exogenous ecotropic | |||||
Friend clone A8 | D88386 | CCCGTGTATCCAATAAATCCTCTT | CGACTTGTGGT | GGATCCGGAGA | GCCCAGGGACC |
Friend clone 57 | X02794 | *****A*TC********G****** | *****C***** | *****T***** | *****A***** |
Friend FB29 | NC_001362 | ************************ | *****C***** | *****T***** | *********** |
Friend PVC211 | M93134 | ************************ | *********** | *********** | *********** |
Moloney | NC_001501 | *****************C****** | *********** | *****G***** | *********** |
Moloney ts1-92b | AF462057 | *****************C****** | ***A*C***** | ****TT***** | *********** |
Cas-Br-E | X57540 | *****************C****** | *****G***** | ********G** | *******A*** |
SRS19-6 | AF019230 | *******T*********G****** | *********** | *********** | *********** |
SL3-3 | AF169256 | *****************G***T** | ***A*C***** | *****T***** | *********** |
RadLV | K03363 | *****************G***T** | ***A*C***** | ****TT***** | *********** |
Rauscher | NC_001819 | ************************ | *********** | *****T***** | *********** |
Graffi GV-1.2 | AB187565 | *****TCC*--******G****** | ***A*C****A | *********** | *********** |
Amphotropic | |||||
1313 | AF411814 | *****************C****** | ****GA***** | ****TT***** | *********** |
Xenotropic | |||||
DG-75 | AF221065 | *******TC********G****** | ***A*C***** | A***TA***** | *********** |
NZB-9-1 | K02730 | *******TC********G***T** | ***A*C***** | *********** | *********** |
Endogenous ecotoropic | |||||
AKV | J01998 | *****************G***T** | ***A*C***** | ****TT***** | *********** |
pSR3 | M87550 | *****************G***T** | ***A*C***** | *****T***** | *********** |
BM5eco | AY252102 | *****************G***T** | ***A*C***** | ****TT***** | *********** |
Polytropic | |||||
MCF1233 | U13766 | *******TC********G***T** | ***AAC****C | ****TT***** | *********** |
Unclassified | |||||
Abelson | NC_001499 | *****************C****** | *********** | *****G***** | *********** |
Feline leukemia virus | NC_001940 | ********CG-******C*-**** | T****C***** | *****GA**CC | C***C****** |
Gibbon ape leukemia virus | NC_001885 | *******G*********A****** | G**GCC***** | *****G*A*AC | C*--******* |