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Table 5 Conservation and variability analysis of B-cell and T-cell epitopes in comparison with HCV E1 proteins of other regions

From: Structural analysis and epitope prediction of HCV E1 protein isolated in Pakistan: an in-silico approach

Peptide

India

Russia

Japan

USA

China

Nepal

Yemen

France

Canada

Somalia

VGQAFTFRPRRH

VS QL FTFS PRRH

VS QL FTFS PRRH

IS QL FTFS PRRH

VGQL FTFS PRH H

AA QL FIIS PXHH

VGQAFTFS PRRH

VGQVI TFK PRRH

VGQM FTY RPRQ H

VGQAFTFRPRRH

VGQAFR FRQ RQ H

TPVTPTVAVRYV

VAL TPTL AA RNA

VAL TPTL AA RNA

VAL TPTL AA RNS

VA VA PTVAT RDG

I PVS PNI AVQQP

TPVS PTVAVKHL

K PVTPTVAVA YG

VQI TPTLSAPSF

TPVTPTVAVRYV

TPVTPTVAVRAP

TPGCIPCVQDGN

TPGCV PCVRE GN

TPGCV PCVQED N

TPGCV PCVRE GN

S PGCV PCVRE GN

V PGCV PCEKV GN

L PGCV PCVATA N

L PGCV PCVKT GN

TPGCV PCVKE GN

TPGCIPCVQDGN

S PGCV PCVKS GN

TNDCPNSSIVYE

TNDCS NSSIVYE

TNDCS NSSIVYE

TNDCS NSSIVYE

TNDCPNSSIVYE

TNDCS ND SITWQ

TNDCS NQ SIVYE

TNDCPNSSV VYE

TNDCPNSSIVYE

TNDCPNSSIVYE

TNDCPNSSIVYE

ATTASVRSH

VP TTTIRR H

VP TTAI RR H

VP TTTI RR H

LP TTQL RR H

AL TRGL RT H

ATTASI RSH

APLE SF RR H

AX TAPL RR A

ATTASVRSH

VI TASI RSH

MNWTPAVGM

MNWS PTAAL

MNWS PTTAL

MNWS PTAAL

MNWS PTTAL

MNWS PTAT M

MNWS PAIGL

MNWS PTTTL

MNWS PTTAL

N/A

Q NWS PT VSL

VGMVVAQVLRL

AAL VVS QL LRI

TAL VVS QL LRI

AAL VAS QLF RI

TAL VVAQLL RV

AT MIL AYAM RI

I GLA VSHLM RL

TTLLL AQIM RI

TALLM AQL LRI

N/A

VSLI VAQVLRL

LGGAHWGML

VA GAHWGI L

VA GAHWGV L

VA GAHWGV L

IA GAHWGV L

IS GAHWGVM

IA GAHWGVM

VA GG HWGV L

VA GG HWGV L

N/A

LV GS HWGV L

SHVDLLVGA

R HVDLLVGA

R HVDLLVGA

R HVDLLVGA

R HI DLLVGS

T HI DMV VMS

SHVDM LVGA

R HVDLM VGA

RA VDY LA GG

SHVDLLVGA

SHVDLM VGS

LTNDCPNSS

V TNDCS NSS

V TNDCS NSS

V TNDCS NSS

V TNDCPNSS

V TNDCS ND S

LTNDCS NQ S

I TNDCPNSS

V TNDCPNSS

LTNDCPNSS

V TNDCPNSS

WTPVTPTVA

WVAL TPTL A

WVAL TPTL A

WVAL TPTL A

WVA VA PTVA

WI PVS PNI A

WTPVS PTVA

WK PVTPTVA

WVQI TPTLS

WTPVTPTVA

WTPVTPTVA

VRYVGATTASV

A RNASVP TTTI

A RNASVP TTAI

A RNSNVP TTTI

T RDGKLP TTQL

VQQP GAL TRGL

VKHL GATTASI

VA YGS APLE SF

APSF GAX TAPL

VRYVGATTASV

VRAP GVI TASI

YVGATTASV

NASVP TTTI

NASVP TTAI

NSNVP TTTI

DGKLP TTQL

QP GAL TRGL

HL GATTASI

YGS APLE SF

SF GAX TAPL

YVGATTASV

AP GVI TASI

VRYVGATTA

A RNASVP TT

A RNASVP TT

A RNSNVP TT

T RDGKLP TT

VQQP GAL TR

VKHL GATTA

VA YGS APLE

APSF GAX TA

VRYVGATTA

VRAP GVI TA

  1. Variable residues in epitopes are shown in bold.