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Table 3 MHC class I binding peptides on the basis of antigenicity

From: Structural analysis and epitope prediction of HCV E1 protein isolated in Pakistan: an in-silico approach

Starting position Peptide Allele Antigenic score
83 ATTASVRSH HLA-A1/HLA-A*1101/HLA-A3/HLA-A*3101/HLA-A*3302/HLA-B*5801 0.9061
154 MNWTPAVGM HLA-A2/HLA-A*0201/HLA-A*3101/HLA-A20/HLA-B*2705/HLA-B*3501/HLA-B*5201/HLA-B*5301/HLA-B*5401/HLA-B*51/HLA-B7/HLA-B*0702/HLA-B8/HLA-Cw*0401/MHC-Ld 1.1593
160 VGMVVAQVL HLA-A*0205/HLA-A24/HLA-A20/HLA-A2.1/HLA-B14/HLA-B*2702/HLA-B*2705/HLA-B*3701/HLA-B*3801/HLA-B*3901/HLA-B*3902/HLA-B*4403/HLA-B*5101/HLA-B*5102/HLA-B*5103/HLA-B*5201/HLA-B*5301/HLA-B*51/HLA-B60/ HLA-B62/HLA-B7/HLA-B8/HLA-Cw*0301/HLA-Cw*0401/HLA-Cw*0602/HLA-Cw*0702/MHC-Db/MHC-Dd/MHC-Kb/ MHC-Kd/ MHC-Kk/MHC-Ld 0.5535
178 LGGAHWGML HLA-A*0205/HLA-A24/HLA-A2.1/HLA-B14/HLA-B*2705/HLA-B*3701/HLA-B*3901/HLA-B*3902/HLA-B*5101/HLA-B*5102/HLA-B*5103/HLA-B*5201/HLA-B*51/HLA-B60/HLA-B62/HLA-B7/HLA-B*0702/HLA-Cw*0301/HLA-Cw*0401/HLA-Cw*0602/HLA-Cw*0702/MHC-Db/MHC-Dd/MHC-Kb/MHC-Kd 0.6771
90 SHVDLLVGA HLA-A*3302/HLA-B*3801/HLA-B*3901/HLA-B*5401/HLA-Cw*0702 0.9645
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Virology Journal

ISSN: 1743-422X