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Table 3 MHC class I binding peptides on the basis of antigenicity

From: Structural analysis and epitope prediction of HCV E1 protein isolated in Pakistan: an in-silico approach

Starting position

Peptide

Allele

Antigenic score

83

ATTASVRSH

HLA-A1/HLA-A*1101/HLA-A3/HLA-A*3101/HLA-A*3302/HLA-B*5801

0.9061

154

MNWTPAVGM

HLA-A2/HLA-A*0201/HLA-A*3101/HLA-A20/HLA-B*2705/HLA-B*3501/HLA-B*5201/HLA-B*5301/HLA-B*5401/HLA-B*51/HLA-B7/HLA-B*0702/HLA-B8/HLA-Cw*0401/MHC-Ld

1.1593

160

VGMVVAQVL

HLA-A*0205/HLA-A24/HLA-A20/HLA-A2.1/HLA-B14/HLA-B*2702/HLA-B*2705/HLA-B*3701/HLA-B*3801/HLA-B*3901/HLA-B*3902/HLA-B*4403/HLA-B*5101/HLA-B*5102/HLA-B*5103/HLA-B*5201/HLA-B*5301/HLA-B*51/HLA-B60/ HLA-B62/HLA-B7/HLA-B8/HLA-Cw*0301/HLA-Cw*0401/HLA-Cw*0602/HLA-Cw*0702/MHC-Db/MHC-Dd/MHC-Kb/ MHC-Kd/ MHC-Kk/MHC-Ld

0.5535

178

LGGAHWGML

HLA-A*0205/HLA-A24/HLA-A2.1/HLA-B14/HLA-B*2705/HLA-B*3701/HLA-B*3901/HLA-B*3902/HLA-B*5101/HLA-B*5102/HLA-B*5103/HLA-B*5201/HLA-B*51/HLA-B60/HLA-B62/HLA-B7/HLA-B*0702/HLA-Cw*0301/HLA-Cw*0401/HLA-Cw*0602/HLA-Cw*0702/MHC-Db/MHC-Dd/MHC-Kb/MHC-Kd

0.6771

90

SHVDLLVGA

HLA-A*3302/HLA-B*3801/HLA-B*3901/HLA-B*5401/HLA-Cw*0702

0.9645