From: Genome structure and transcriptional regulation of human coronavirus NL63
Amino acid | Codon | Humana | HCoV-NL63 | 1ab (20190) | S (4071nt) | ORF3 (678nt) | E (234nt) | M (681nt) | N (1134nt) |
---|---|---|---|---|---|---|---|---|---|
Arg | CGA | 0.62b | 0.16 | 0.12 | 0.22 | 0.44 | 1.28 | 0.00 | 0.26 |
 | CGC | 1.07 | 0.28 | 0.21 | 0.37 | 0.00 | 0.00 | 0.88 | 1.06 |
 | CGG | 1.16 c | 0.06 | 0.04 | 0.15 | 0.00 | 0.00 | 0.00 | 0.00 |
 | CGU | 0.46 | 1.57 | 1.49 | 1.40 | 1.77 | 0.00 | 2.20 | 3.44 |
 | AGA | 1.17 | 0.78 | 0.76 | 0.74 | 0.88 | 0.00 | 1.32 | 1.06 |
 | AGG | 1.17 | 0.47 | 0.49 | 0.22 | 0.00 | 1.28 | 0.00 | 1.32 |
Leu | CUA | 0.70 | 0.39 | 0.31 | 0.29 | 2.65 | 1.28 | 0.88 | 0.26 |
 | CUC | 1.97 | 0.36 | 0.24 | 0.74 | 0.88 | 2.56 | 0.44 | 0.26 |
 | CUG | 4.01 | 0.21 | 0.18 | 0.37 | 0.44 | 1.28 | 0.00 | 0.00 |
 | CUU | 1.30 | 2.97 | 2.84 | 2.87 | 4.42 | 3.85 | 5.73 | 2.91 |
 | UUA | 0.74 | 2.68 | 2.75 | 2.51 | 2.65 | 3.85 | 4.41 | 0.79 |
 | UUG | 1.28 | 2.95 | 2.97 | 3.02 | 3.54 | 2.56 | 2.20 | 2.38 |
Ser | UCA | 1.20 | 1.49 | 1.38 | 1.92 | 1.33 | 0.00 | 0.44 | 2.91 |
 | UCC | 1.76 | 0.33 | 0.30 | 0.59 | 0.00 | 1.28 | 0.00 | 0.26 |
 | UCG | 0.45 | 0.08 | 0.07 | 0.00 | 0.44 | 0.00 | 0.00 | 0.26 |
 | UCU | 1.49 | 3.06 | 2.76 | 3.98 | 2.21 | 0.00 | 3.52 | 5.82 |
 | AGC | 1.94 | 0.34 | 0.27 | 0.59 | 0.00 | 0.00 | 0.88 | 0.79 |
 | AGU | 1.21 | 2.47 | 2.51 | 2.36 | 2.21 | 1.28 | 3.08 | 2.12 |
Thr | ACA | 1.49 | 1.72 | 1.89 | 1.33 | 0.88 | 1.28 | 2.64 | 0.26 |
 | ACC | 1.91 | 0.44 | 0.40 | 0.52 | 0.00 | 1.28 | 0.44 | 1.06 |
 | ACG | 0.62 | 0.19 | 0.13 | 0.37 | 0.44 | 0.00 | 0.88 | 0.00 |
 | ACU | 1.30 | 3.58 | 3.28 | 5.53 | 4.87 | 1.28 | 1.76 | 2.65 |
Pro | CCA | 1.68 | 1.03 | 1.01 | 1.11 | 0.44 | 2.56 | 0.44 | 1.59 |
 | CCC | 2.00 | 0.18 | 0.15 | 0.22 | 0.00 | 0.00 | 0.00 | 0.79 |
 | CCG | 0.70 | 0.10 | 0.07 | 0.22 | 0.00 | 0.00 | 0.44 | 0.00 |
 | CCU | 1.74 | 2.10 | 1.93 | 1.92 | 3.10 | 1.28 | 2.20 | 5.29 |
Ala | GCA | 1.60 | 1.51 | 1.66 | 1.33 | 0.00 | 2.56 | 1.32 | 0.26 |
 | GCC | 2.83 | 0.64 | 0.55 | 1.11 | 0.88 | 0.00 | 0.44 | 0.79 |
 | GCG | 0.75 | 0.14 | 0.13 | 0.22 | 0.00 | 0.00 | 0.00 | 0.26 |
 | GCU | 1.86 | 3.38 | 3.39 | 3.02 | 3.98 | 2.56 | 2.64 | 4.76 |
Gly | GGA | 1.64 | 0.46 | 0.49 | 0.44 | 0.00 | 0.00 | 0.44 | 0.26 |
 | GGC | 2.26 | 0.48 | 0.34 | 1.18 | 1.33 | 0.00 | 0.44 | 0.00 |
 | GGG | 1.65 | 0.14 | 0.13 | 0.07 | 0.00 | 0.00 | 0.44 | 0.53 |
 | GGU | 1.08 | 5.19 | 5.56 | 4.35 | 4.42 | 1.28 | 4.41 | 3.44 |
Val | GUA | 0.71 | 1.04 | 1.19 | 0.59 | 0.00 | 1.28 | 0.88 | 0.79 |
 | GUC | 1.46 | 0.89 | 0.77 | 0.96 | 2.65 | 2.56 | 1.76 | 0.79 |
 | GUG | 2.86 | 0.77 | 0.68 | 1.03 | 0.88 | 1.28 | 2.20 | 0.26 |
 | GUU | 1.10 | 7.18 | 7.41 | 6.63 | 7.52 | 3.85 | 7.49 | 5.29 |
Lys | AAA | 2.40 | 3.25 | 3.70 | 1.33 | 2.65 | 2.56 | 1.32 | 3.70 |
 | AAG | 3.22 | 2.25 | 2.29 | 1.77 | 1.77 | 0.00 | 1.76 | 4.23 |
Asn | AAC | 1.92 | 1.27 | 1.05 | 2.28 | 0.44 | 0.00 | 0.88 | 2.38 |
 | AAU | 1.67 | 4.88 | 4.73 | 6.19 | 3.54 | 3.85 | 3.96 | 4.50 |
Gln | CAA | 1.2 | 1.97 | 1.89 | 2.58 | 1.77 | 5.13 | 0.44 | 1.59 |
 | CAG | 3.44 | 1.03 | 0.76 | 1.69 | 0.00 | 0.00 | 2.20 | 3.70 |
His | CAC | 1.50 | 0.39 | 0.39 | 0.52 | 0.44 | 0.00 | 0.00 | 0.27 |
 | CAU | 1.07 | 1.50 | 1.6 | 1.03 | 0.88 | 1.28 | 2.64 | 1.06 |
Glu | GAA | 2.89 | 2.20 | 2.35 | 1.55 | 3.10 | 1.28 | 1.32 | 2.12 |
 | GAG | 4.00 | 1.12 | 1.17 | 0.66 | 0.44 | 0.00 | 1.32 | 2.38 |
Asp | GAC | 2.55 | 1.19 | 1.2 | 1.03 | 2.21 | 1.28 | 1.32 | 0.79 |
 | GAU | 2.2 | 4.27 | 4.67 | 3.10 | 1.33 | 2.56 | 0.88 | 5.56 |
Tyr | UAC | 1.54 | 0.89 | 0.82 | 1.03 | 1.77 | 1.28 | 1.32 | 1.06 |
 | UAU | 1.21 | 3.8 | 3.83 | 4.13 | 5.75 | 5.13 | 3.52 | 0.79 |
Cys | UGC | 1.26 | 0.30 | 0.31 | 0.29 | 0.44 | 0.00 | 0.00 | 0.26 |
 | UGU | 1.03 | 3.01 | 3.28 | 3.02 | 1.33 | 2.56 | 1.76 | 0.00 |
Phe | UUC | 2.04 | 0.68 | 0.58 | 0.74 | 1.77 | 2.56 | 0.88 | 1.06 |
 | UUU | 1.72 | 5.76 | 6.02 | 4.94 | 7.52 | 8.97 | 5.29 | 2.65 |
Ile | AUA | 0.73 | 1.30 | 1.29 | 1.62 | 1.33 | 2.56 | 0.88 | 0.26 |
 | AUC | 2.11 | 0.33 | 0.30 | 0.44 | 0.00 | 0.00 | 1.32 | 0.26 |
 | AUU | 1.58 | 3.76 | 3.77 | 3.68 | 3.98 | 7.69 | 3.08 | 3.17 |