Table 3 Pairwise comparisons of variation at different codon positions in reovirus genome segments
From: Comparisons of the M1 genome segments and encoded μ2 proteins of different reovirus isolates
Variation (%) in the long open reading frame of genome segment | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Codon position | Isolate pair | L1 | L2 | L3 | M1 | M2 | M3 | S2 | S3 | S4 |
firsta | T1L:T2J | 16.9 | 19.9 | 12.2 | 24.6 | 11.1 | 25.3 | 13.7 | 25.5 | 13.1 |
T2J:T3D | 16.7 | 20.4 | 12.7 | 26.1 | 10.7 | 25.0 | 14.0 | 25.5 | 13.9 | |
T1L:T3D | 2.4 | 15.4 | 1.4 | 1.5 | 6.0 | 7.6 | 6.1 | 6.6 | 4.0 | |
seconda | T1L:T2J | 5.3 | 8.0 | 3.3 | 11.8 | 1.7 | 10.0 | 4.1 | 8.4 | 5.1 |
T2J:T3D | 5.1 | 7.5 | 3.2 | 11.8 | 1.7 | 9.6 | 4.1 | 8.0 | 5.5 | |
T1L:T3D | 0.8 | 3.5 | 0.3 | 0.4 | 2.1 | 2.0 | 0.0 | 2.2 | 1.1 | |
thirda | T1L:T2J | 77.1 | 83.7 | 79.4 | 80.1 | 81.5 | 81.2 | 74.0 | 79.1 | 73.8 |
T2J:T3D | 76.7 | 77.4 | 79.1 | 81.0 | 82.7 | 83.0 | 73.0 | 73.9 | 76.7 | |
T1L:T3D | 12.9 | 76.1 | 7.5 | 6.5 | 53.3 | 39.2 | 53.6 | 48.1 | 21.9 | |
syn.b | T1L:T2J | 88.3 | 90.2 | 89.6 | 85.8 | 90.0 | 87.1 | 83.8 | 90.2 | 81.9 |
T2J:T3D | 87.5 | 84.2 | 89.3 | 87.0 | 89.3 | 89.8 | 83.6 | 85.4 | 84.2 | |
T1L:T3D | 15.0 | 85.9 | 8.8 | 7.9 | 59.3 | 46.4 | 63.1 | 58.2 | 25.8 | |
nonsyn.b | T1L:T2J | 5.9 | 9.1 | 3.8 | 12.6 | 2.6 | 11.8 | 4.8 | 10.2 | 6.2 |
T2J:T3D | 5.9 | 8.9 | 3.9 | 13.1 | 3.2 | 11.5 | 4.7 | 9.6 | 6.8 | |
T1L:T3D | 0.8 | 5.0 | 0.3 | 0.5 | 1.2 | 2.0 | 0.7 | 1.3 | 1.3 | |
cons.c | T1L:T2J | 60.0 | 66.3 | 57.1 | 63.8 | 50.0 | 60.6 | 50.0 | 60.8 | 73.5 |
5.0 | 8.7 | 2.5 | 12.2 | 1.3 | 10.7 | 2.9 | 8.5 | 6.8 | ||
T2J:T3D | 62.7 | 64.5 | 56.1 | 64.6 | 65.2 | 60.5 | 52.0 | 60.8 | 71.1 | |
5.1 | 8.6 | 2.5 | 12.9 | 2.1 | 10.0 | 3.1 | 8.5 | 7.4 | ||
T1L:T3D | 36.4 | 77.4 | 88.9 | 80.0 | 50.0 | 62.5 | 100 | 40.0 | 63.6 | |
0.6 | 5.6 | 0.6 | 1.1 | 1.1 | 2.8 | 1.2 | 1.0 | 1.9 | ||
noncon.c | T1L:T2J | 18.1 | 10.7 | 17.9 | 17.0 | 11.1 | 18.9 | 20.8 | 17.6 | 14.7 |
1.5 | 1.4 | 0.8 | 3.3 | 0.3 | 3.3 | 1.2 | 2.5 | 1.4 | ||
T2J:T3D | 18.6 | 9.9 | 19.3 | 16.3 | 13.0 | 16.8 | 20.0 | 15.7 | 21.1 | |
1.5 | 1.3 | 0.9 | 3.3 | 0.4 | 2.8 | 1.2 | 2.2 | 2.2 | ||
T1L:T3D | 18.2 | 8.6 | 11.1 | 0.0 | 12.5 | 3.1 | 0.0 | 20.0 | 27.3 | |
0.3 | 0.6 | 0.1 | 0.0 | 0.3 | 0.1 | 0.0 | 0.5 | 0.8 | ||