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Table 2 Primer and Probe Sequences

From: Persistent expression of chemokine and chemokine receptor RNAs at primary and latent sites of herpes simplex virus 1 infection

 

Forward Primer

Reverse Primer

Probe*

HSV

   

tk

CGAGACAATCGCGAACATCTAC

CCCCGGCCGATATCTCA

CCACACAACACCGCCTCGACCA

ICP0

CTGCGCTGCGACACCTT

CAATTGCATCCAGGTTTTCATG

TGCATGCACCGCTTCTGCATCC

Chemokine receptor

   

CCR1

GGGTGAACGGTTCTGGAAGTAC

CAGCCATTTTGCCAGTGGTA

ACATGCCTTTGAAACAGCTGCCGAA

CCR2

ATGAGTAACTGTGTGATTGACAAGCA

GCAGCAGTGTGTCATTCCAAGA

CTCTGTCACCTGCATGGCCTGGTCT

CCR3

ACCAGCTGTGAGCAGAGTAAACAT

CACAGCAGTGGGTGTAGGCA

CACCTCAGTCACCTGCATGGCCA

CCR5

ACTGCTGCCTAAACCCTGTCA

GTTTTCGGAAGAACACTGAGAGATAA

TCCGGAACTTCTCTCCAACAAAGGCA

CCR6

TTGGTGCAGGCCCAGAAC

GAACACGAGAACCACAGCGAT

CCAAGAGGCACAGAGCCATCCGA

CCR7

CTGCTACCTCATTATCATCCGTACCT

TGATCACCTTGATGGCCTTGT

CTCCAGGCACGCAACTTTGAGCG

CXCR3

TGTAGTTGGGCTAGCTCGAACTT

ACCTGGATATATGCTGAGCTGTCA

GCATCCTGGCAGCAAAGTTACGGG

CXCR4

CTCCAAGGGCCACCAGAA

GGCAAAGAAAGCTAGGATGAGG

CGCAAGGCCCTCAAGACGACAGTC

Chemokine

   

MIP-1α

TCATCGTTGACTATTTTGAAACCAG

GCCGGTTTCTCTTAGTCAGGAA

AGCCTTTGCTCCCAGCCAGGTGTC

MIP-1β

AGGGTTCTCAGCACCAATGG

GCTGCCGGGAGGTGTAAGA

CTCTGACCCTCCCACTTCCTGCTGTTT

RANTES

CTGTCATCGCTTGCTCTAGTCCTA

CGGATGGAGATGCCGATTT

ATCCCCTACTCCCACTCCGGTCCTG

MCP-1

GCTGGGTTCAGTTTCCTTAAGC

CCTAGTCTTTAGCTGTGAGACCTTCTG

AGGCCTCGCTGCTCCACATCCA

Eotaxin-1

CCTAAGACGTGCTCTGAGGGAAT

TCCCATCTGGAACTACATGAAGC

TCAGCACCAGTCGCCCAAGGACT

Cytokine

   

IFN-γ

TGAGTATTGCCAAGTTTGAGGTCA

GTGGACCACTCGGATGAGCT

CCACAGGTCCAGCGCCAAGCA

TNF-α

ACAAGGCTGCCCCGACTAC

CGCAGAGAGGAGGTTGACTT

CCTCACCCACACCGTCAGCCG

  1. * all probes FAM-5' and 3'-TAMRA