Expression of frog virus 3 genes is impaired in mammalian cell lines
© Eaton et al; licensee BioMed Central Ltd. 2008
Received: 28 May 2008
Accepted: 21 July 2008
Published: 21 July 2008
Frog virus 3 (FV3) is a large DNA virus that is the prototypic member of the family Iridoviridae. To examine levels of FV3 gene expression we generated a polyclonal antibody against the FV3 protein 75L. Following a FV3 infection in fathead minnow (FHM) cells 75L was found in vesicles throughout the cytoplasm as early as 3 hours post-infection. While 75L expressed strongly in FHM cells, our findings revealed no 75L expression in mammalian cells lines despite evidence of a FV3 infection. One explanation for the lack of gene expression in mammalian cell lines may be inefficient codon usage. As a result, 75L was codon optimized and transfection of the codon optimized construct resulted in detectable expression in mammalian cells. Therefore, although FV3 can infect and replicate in mammalian cell lines, the virus may not express its full complement of genes due to inefficient codon usage in mammalian species.
Iridoviridae family members are large, icosahedral, double-stranded DNA viruses that are unique among eukaryotic virus genomes because they are both circularly permuted and terminally redundant . The Iridoviridae family of viruses is comprised of five genera that can infect a variety of invertebrates (Iridovirus, Chloriridovirus) and ectothermic vertebrates (Lymphocystivirus, Ranavirus, Megalocytivirus) . Specifically, Ranaviruses infect a variety of vertebrate hosts and have been isolated from fish, reptiles, and amphibians . Frog virus 3 (FV3) is the type species of the genus Ranavirus and the best studied iridovirus at the molecular level. Although FV3 has not been isolated from fish, closely related viruses to FV3 including epizootic haematopoietic necrosis virus (EHNV) and Bohle virus (BIV) have both been previously isolated from a variety of fish species [4–6]. However, while FV3 is restricted to infecting a variety of amphibians and reptiles in vivo, fathead minnow (FHM) cells (fish) are highly susceptible to FV3 infections and are commonly used to culture the virus in vitro [7–9]. Therefore, FHM cells will be used to study the virus in a natural environment.
Although FV3 is unable to naturally infect any endothermic species, FV3 can infect and produce infectious virions in mammalian cell lines including human cell lines [10, 11] when cultured at 30°C . Mammalian cells will therefore be used to represent species that FV3 does not normally infect. Also, because of the ease with working in mammalian cell lines as compared to ectothermic cell lines, mammalian cell lines are often used to characterize FV3 genes and study virus replication. In order to further investigate FV3 infections in mammalian cell lines, we chose to examine the non-essential gene 75L, which is unique to the Ranavirus genus of the Iridoviridae family . 75L, an 84 amino acid protein, has homology to cellular lipopolysaccharide-induced tumor necrosis factor-α factor (LITAF)  and is thought to play a role in virus-host interactions .
In order to determine whether FV3-75L, a non-essential gene, is expressed in mammalian cells following a FV3 infection, the mammalian cell lines BGMK (green monkey) and HeLa (human), as well as an ectothermic cell line, FHM were infected with FV3 at a multiplicity of infection (MOI) of 1. FV3 was obtained from the American Type Culture Collection (ATCC; Manassas, VA) and was propagated on FHM cells (ATCC) grown in modified Eagle's medium (MEM; Invitrogen, Burlington, ON) supplemented with 10% fetal bovine serum (FBS; HyClone, Ottawa, ON), penicillin (100 U/mL) and streptomycin (100 g/mL) at 30°C. BGMK and HeLa cells were obtained from ATCC and maintained in Dulbecco's modified Eagle's medium (DMEM; HyClone) supplemented with 7% and 10% FBS respectively, 2 mM L-glutamine, penicillin (100 U/mL), and streptomycin (100 g/mL) at 37°C with 5% CO2. Once infected with FV3, all cells were incubated at 30°C. At various time points post-infection, cells were fixed in 3.7% paraformaldehyde in phosphate buffer saline (PBS) for 10 minutes, and permeabilized in a 0.1% Triton X-100 solution for 4 minutes. Indirect immunofluorescence (IF) was performed  using either a 1/200 dilution of rabbit anti-75L antibody produced by GenScript (Piscataway, NJ), an affinity purified anti-peptide serum raised against the 75L peptide sequence CMDDKFTTLPCELED, or a 1/2000 dilution of rabbit anti-FV3 antibody (V.G. Chinchar, University of Mississippi Medical Center). The primary antibodies were detected using goat anti-rabbit FITC (Jackson ImmunoResearch Inc. West Grove, PA) and images were captured using a Leica DM SP2 confocal microscope (Leica, Wetzlar, Germany). Images were assembled using Adobe Photoshop (Adobe, San Jose, CA).
Since 75L was not expressed in mammalian cell lines such as BGMK and HeLa cells following a FV3 infection, we wanted to investigate whether this was a property of the 75L gene or a defect in viral expression of 75L. Therefore, we generated a C-terminal myc-tagged FV3-75L. In order to generate FV3 DNA for use in PCR, FHM cells were infected with FV3 at a MOI of 0.1. When cytopathic effects were observed, cells were harvested and re-suspended in 400 μL dH2O. Cells were freeze-thawed three times and an equal volume of phenol:chloroform was added and the aqueous phase was transferred to a fresh tube and 10% (v/v) 5 M sodium acetate and 20% (v/v) ethanol (100%) was added. Following a 15 minute incubation on ice, DNA was pelleted by centrifugation and 10,000 × g for 10 minutes. DNA was air dried and re-suspended in dH2O. A 50 μL reaction mixture containing 10 ng of DNA from virally infected cells, 1× PCR buffer (Invitrogen), 3.0 mM MgCl2 (Invitrogen), 0.1 mM dNTPs, 0.2 mM of FV3-75L-forward (5'-AAGCTTATTA AAGATGGACGACAAG-3') and FV3-75L-reverse (5'CTCGAGCTACAGATCTTCTTCAGAAATAAGTTTTTGTTCTAAAATTTTGTA CACAAACAC-3'), and 2.5 U of Taq DNA polymerase 5 U/μL (Invitrogen) was used to amplify FV3-75L and add a myc tag to the C terminus using the following cycling conditions: 94°C for 30 seconds, 52°C for 30 seconds, 72°C for 90 seconds for 30 cycles. The resulting product was cloned into the eukaryotic expression vector pcDNA3.1 (Invitrogen). BGMK and FHM cells were grown to 80% confluence on 22 mm coverslips in a 6-well plate. The cells were transfected with 5 μg of FV3-75L DNA using a calcium phosphate mediated transfection protocol . Twenty-four hours post-transfection, the cells were fixed and processed for IF using mouse anti-myc antibody (Roche, Indianapolis, IN) to detect 75L and goat anti-mouse FITC antibodies (Jackson ImmunoResearch Inc.).
This data demonstrates that at least one FV3 gene does not produce detectable proteins in mammalian cell lines. We believe that the lack of 75L expression is not unique to this gene as we have been unable to express a variety of FV3 genes including FV3 5R, 13R, 28R, and 29R in mammalian cell lines (data not shown). Although we have not yet shown that these genes are unable to express because of inappropriate codon usage in mammalian cell lines, the research conducted here suggests that poor codon usage is a likely reason for the lack of expression.
The consequence of codon bias in FV3 and perhaps the entire Iridoviridae family is that only a subset of all viral genes may be expressed in mammalian cell lines. However, essential viral genes must express in mammalian cell lines since the virus is able to infect and successfully replicate in many cell lines, including rodent, human, and simian cell lines (Figure 2) [10, 11]. Although essential viral genes must be expressed, non-essential genes that are not directly involved in replication of the virus may or may not be expressed in mammalian cell lines. The possibility therefore exists that virus-host interaction may differ in mammalian cells as compared to ectothermic cell lines because the entire subset of viral genes is not expressed in mammalian cells.
Therefore, when investigating the biological properties of FV3 and perhaps other iridoviruses, it is critical that these studies be performed in ectothermic cells otherwise the entire complement of viral genes may not be expressed. In addition to the critical finding that non-essential genes may not be expressed in mammalian cells, we have also demonstrated that this expression defect can be reversed through codon optimization of the viral genes. Thus, for biochemical studies relying on the use of mammalian cell lines, codon optimization may be a solution for achieving higher levels of expression of iridovirus genes that express poorly in mammalian systems. This work has also provided a means for further characterization of the function of 75L.
This work is supported by Discovery Grants (Natural Science and Engineering Research Council (NSERC) of Canada) to C.R.B. H.E.E. is the recipient of a NSERC postgraduate scholarship. We thank Dr. V.G. Chinchar of the University of Mississippi Medical Center for providing the anti-FV3 antibodies.
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