Baculovirus-mediated promoter assay and transcriptional analysis of white spot syndrome virus orf427 gene
© Lu et al; licensee BioMed Central Ltd. 2005
Received: 08 July 2005
Accepted: 23 August 2005
Published: 23 August 2005
White spot syndrome virus (WSSV) is an important pathogen of the penaeid shrimp with high mortalities. In previous reports, Orf427 of WSSV is characterized as one of the three major latency-associated genes of WSSV. Here, we were interested to analyze the promoter of orf427 and its expression during viral pathogenesis.
in situ hybridization revealed that orf427 was transcribed in all the infected tissues during viral lytic infection and the translational product can be detected from the infected shrimp. A time-course RT-PCR analysis indicated that transcriptional products of orf427 could only be detected after 6 h post virus inoculation. Furthermore, a baculovirus-mediated promoter analysis indicated that the promoter of orf427 failed to express the EGFP reporter gene in both insect SF9 cells and primary shrimp cells.
Our data suggested that latency-related orf427 might not play an important role in activating virus replication from latent phase due to its late transcription during the lytic infection.
White spot syndrome virus (WSSV) was assigned to the genus Whispovirus belonging to new family Nimaviridae in the universal database of ICTV (International Committee of Taxonomy of Viruses, http://www.ncbi.nlm.nih.gov/ICTVdb/Ictv/index.htm). WSSV is probably the most important pathogen of the cultured penaeid shrimp resulting in high mortalities . Even though WSSV represents one of the largest known animal viruses with a 305 kb double-stranded circular DNA genome, most of the putative 185 ORFs bear no homology to known genes in the GenBank [2, 3]. The technical difficulty in characterization of the WSSV ORFs lies mainly in the lack of established shrimp cell lines for in vitro reproduction of the virus . During viral lytic infection, just as other DNA viruses, the genes encoded by WSSV can be classified as immediately early, delayed early, late and very late genes. Most, if not all, immediate-early genes encode transcriptional regulation proteins. They are distinguished from other viral genes by the fact that their transcription is independent of prior viral gene product expressed in transient assays . Although during the last decade, intensive efforts have been undertaken for characterization of the structural protein genes and a few non-structural protein genes that show homology to known sequences in the databases, little is known about the molecular mechanisms underlying the WSSV life cycle and mode of infection.
Recently, three viral transcripts (Orf427, Orf151 and Orf366) and their corresponding DNA sequence have been detected in both specific-pathogen-free (SPF) shrimps and WSSV-infected shrimps through a WSSV-specific DNA microarray study. From this study, Orf427, Orf151 and Orf366 were determined to be latency-associated genes of WSSV . These data suggest that WSSV remains latent in healthy shrimps. In a similar global analysis, three immediately early (IE) genes (ie1, ie2, and ie3) of WSSV were identified in infected shrimps . Identification of the IE genes and latency-associated genes can lead to better understanding of the life cycle of WSSV, shedding light on the molecular mechanisms in WSSV-induced mortality. In a previous study, we have found that latency-related ORF427 interacted with a shrimp protein phosphatase (PPs) . To further characterize the orf427 gene, we were interested to analyze the promoter of orf427 and its expression during viral pathogenesis.
Infection of SF9 cells and transduction of shrimp primary cells with the recombinant baculovirses were carried out at a MOI of 10 and 100, respectively. As expected, the ie1 promoter drove the expression of the egfp reporter gene in both insect SF9 and the primary shrimp cells, as demonstrated by direct light and fluorescence microscopy; while the orf427 promoter didn't express egfp to a detectable level in either cell type (Fig. 1B and 1C). The expression of GFP could be confirmed in both cells through immunoblot assay using monoclonal anti-GFP antibody (Fig. 1D). We also noticed that the primary shrimp cells could only be transduced at a low percentage of about 5% (Fig. 1C).
Establishment and maintenance of latency in the host after primary infection have been investigated in some well-studied DNA viruses such as: herpes simplex virus (HSV) , human herpesvirus (HHV) , cytomegalovirus (CMV) , and Epstein-Barr virus . However, the molecular mechanisms that control virus latency and reactivation remain to be elucidated. Because of problems associated with conducting molecular studies in animals, it has proven difficult for investigators to move beyond phenomenal description and identification of latency-associated transcripts (LATs). Most of the characterized LATs were expressed at low levels during lytic replication but were major transcripts during latent infection, and their functions were not understood. These include a set of latency-associated transcripts from the HHV-6 IE-A region , a set of genes controlled by the Qp promoter of Epstein-Barr virus , and latency-associated transcripts from both DNA strands in the ie1/ie2 region of CMV . U94 gene of HHV-6 is one of the better-characterized LATs. U94 protein acts as a transactivator by binding to a transcription factor and enables the establishment and/or maintenance of latent infection at the primary infection site like monocytes and early bone marrow progenitor cells . Our data indicate that orf427 is a very late gene during viral lytic infection, and this correlates with the finding that ORF427 is not a transcriptional regulator, but a protein phosphatase-interacting protein .
Most recently, nuclear protein phosphatase-1 was reported to regulate HIV-1 transcription both in vitro and in vivo . Primary functional dissection of Orf427 suggests that orf427 most likely encodes a calcium-binding regulator of shrimp protein phosphatase, with the C terminus responsible for the binding of PPs (data not shown). This suggests that orf427 is not necessary for viral reactivation and only contributes to maintaining viral latency by affecting the function of shrimp protein phosphatase. Similarly, the LAT gene of HSV-1 has been shown to be dispensable for viral reactivation from latently infected mouse dorsal root ganglia cultured in vitro .
The development of a continuous shrimp cell line in vitro is urgently required for further characterization of WSSV infection at the molecular and cellular levels. In recent years, encouraging progress has been made in shrimp cell culture using conventional primary culture techniques. Several investigators have reported that WSSV infects the primary cultures of lymphoid organs from the black tiger shrimp, P. monodon; however, recent findings suggest that the replication of WSSV in lymphoid organ primary cell is low [4, 9, 21]. Besides this, the primary cell couldn't be transfected with common liposome methods. We thus took alternative approach to monitor the gene expression in the primary shrimp cells. Recently AcMNPV (Autographa californica multiple nucleopolyhedrovirus), containing an appropriate eukaryotic promoter, was used to efficiently transfer and express foreign genes in a variety of mammalian cells and several animal models . Considering that shrimp is more phylogenically related to arthropods, the natural host of AcMNPV, we employed recombinant baculovirus-mediated transduction to introduce foreign genes into the primary shrimp cells. As expected, the primary shrimp cells were transduced in our experiments; and the low transduction efficiency might be due to the possible inhibition effect of L15 medium on the attachment of baculovirus to the cell membrane (for example, the pH value of medium for insect cells to amplify baculovirus is 6.8, while the pH value of L15 medium is above 7.0). The transduction efficiency might be significantly increased by using VSV-G-containing baculovirus as gene delivery vehicle . The successful transduction of cultured shrimp cells with recombinant baculovirus may pave the way for the development of baculovirus-based vaccines for the shrimp farming industry.
The data presented here demonstrates that latency-associated Orf427 is only transcribed in the very late phase during viral lytic infection. In contrast to immediately early promoters, the promoter of orf427 couldn't drive the expression of an egfp reporter gene independently. Our data suggest that as a very late protein during viral lytic infection, ORF427 might only function in maintaining WSSV in the latent phase but is not required for virus reactivation.
Materials and methods
Virus, shrimp, and cells
WSSV used in this study was isolated from Penaeus monodon shrimps, which were imported from Indonesia. Purification of the virus was performed as previously described . P. monodon shrimps challenged through intramuscular injection were sampled at different time points postinfection and immediately frozen and stored at -80°C. Adult P. monodon shrimps weighing approximately 30–100 g were used for primary cell culture. Monolayer cell cultures from minced fragments of lymphoid tissue were established as described by Chen . Primary cells were maintained in 2 × L15 medium from Invitrogen. Insect SF9 cells (Invitrogen) were maintained and propagated in SF-900II serum-free medium (Invitrogen). Infection of SF9 cells and transduction of foreign genes into shrimp primary cells were performed as previously described .
Construction of recombinant baculoviruses
The ie1 basic promoter region from -1 to -512 was amplified using primer set of 5'-TCCCTACGTATCAATTTTATGTGGCTAATGGAGA-3' and 5'-ACGCGTCGA CCTTGAGTGGAGAGAGAGCTAGTTATAA-3' . To make sure that the selected promoter region contained the full orf427 promoter, the upstream sequence of orf427, starting from -1 to -3500, was PCR-amplified from WSSV genome with primer set of 5'-TCCCTACGTATGGGTCAGAAAAGAACCC-3' and 5'-ACGCGTCGACATC TCAAAGGTTGCCAATGACCAACAT-3'. Both promoters were digested with SnaBI and SalI, and inserted into the corresponding sites of shuttle vector pFastBac1 (Invitrogen). The EGFP cDNA was first cut with SalI and NotI from the pEGFP-N1 vector (Clontech), followed by insertion into the pFASTBac1 vector bearing the promoter sequence of orf427 or ie1 gene. Recombinant baculoviruses bearing the EGFP-expression cassette were constructed according to the Bac-To-Bac protocol (Invitrogen). The infectious titers of the recombinant baculoviruses were determined by plaque assay with SF9 cells.
Development of polyclonal antibody and Western blot analysis
The C terminal partial fragment amplified from orf427 template using primer pair of 5'-CGGGATCCGTTAGAGCTTCAAAGGTGGA-3' and 5'-ACGCGTCGAC TTATTTTCCTTGATCTAGAG-3' was inserted into the pGEX4T-3 vector at BamH1 and Sal I site. The partial ORF427 was expressed and purified in E. coli as a glutathione S-transfererase (GST) fusion protein according to manufacturer's protol (Amersham Pharmacia). SPF Guinea pigs were immunized and specific antisera were prepared using standard procedures. Homogenized protein mixtures from infected shrimp or virus-infected cells were harvested and subjected to sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE). Immunoblot analysis was performed according to standard protocol .
In situ hybridization
In situ hybridization was performed on paraffin embedded tissue sections using a DIG-labeled antisense RNA probes. Both WSSV-free shrimps and WSSV-infected shrimps were fixed in 4% (W/V) paraformaldehyde (PFA)-PBS, dehydrated, and embedded in paraffin. Sections of 6 μm in thickness were made and attached to 3-aminopropyltriethoxy-silane-coated slides. DIG-labeled antisense riboprobe specific for orf427 was synthesized by in vitro transcription using T7 RNA polymerase (Stratagene) and 10 × Dig labeling mix (Roche). The transcription template was PCR amplified from orf427 with a primer set of 5'-TAATACGACTCACTATAGGGCGCACCAGAAGAAAGGGTCT-3', and 5'-AAGGAAAC CATCGAGGCCTT-3'. The T7 promoter sequence was flanked at the 5' of the reverse primer. Hybridization was performed in 50% formamide and 5 × SSC in a humified chamber at 60°C for 14–16 h (the background is too high at 50°C in our hybridization system). The hybridization was visualized by using alkaline phosphatase-conjugated anti-digoxigenin antibody.
Total RNA was extracted from heads of the WSSV-infected shrimps using TRIzol-LS reagent (Life Technologies). For RT-PCR, an aliquot of total RNA (20 μg) was treated with 200 U of RNase-free DNase I (Gibco BRL) at 37°C for 30 min to remove residual DNA. First strand cDNA synthesis was performed using the oligo-dT primer, and 2 μl of the cDNA was subjected to PCR in a 50 μl reaction mixture.
The authors would like to thank Dr. He Qigai for assistance in preparing the antibody and Dr. Beau James Fenner for reviewing the manuscript. This work was supported by Temasek Holdings Pte Ltd of Singapore.
- Chou HY, Huang CY, Wang CH, Chiang HC, Lo CF: Pathogenicity of a baculovirus infection causing white spot syndrome in cultured penaeid shrimp in Taiwan. Dis Aquat Org 1995, 23: 165-173.View ArticleGoogle Scholar
- van Hulten MCW, Witteveldt J, Peters S, Kloosterboer N, Tarchini R, Fiers M, Sandbrink H, Klein Lankhorst R, Vlak JM: The white spot syndrome virus DNA genome sequence. Virology 2001, 286: 7-22. 10.1006/viro.2001.1002View ArticlePubMedGoogle Scholar
- Yang F, He J, Lin XH, Li Q, Pan D, Zhang X, Xu X: Complete genome sequence of the shrimp white spot bacilliform virus. J Virol 2001, 75: 11811-11820. 10.1128/JVI.75.23.11811-11820.2001PubMed CentralView ArticlePubMedGoogle Scholar
- Maeda M, Saitoh H, Mizuki E, Itami T, Ohba M: Replication of white spot syndrome virus in ovarian primary cultures from the kuruma shrimp, Marsupenaeus japonicus. J Virol Methods 2004, 116: 89-94. 10.1016/j.jviromet.2003.10.013View ArticlePubMedGoogle Scholar
- Blissard GW, Rohrmann GF: Baculovirus diversity and molecular biology. Annu Rev Entomol 1990, 35: 127-155. 10.1146/annurev.en.35.010190.001015View ArticlePubMedGoogle Scholar
- Khadijah S, Neo SY, Hossain MS, Miller LD, Matharan S, Kwang J: Identification of white spot syndrome virus latency-related genes in specific-pathogen-free shrimps by use of a microarray. J Virol 2003, 77: 10162-10167. 10.1128/JVI.77.18.10162-10167.2003PubMed CentralView ArticlePubMedGoogle Scholar
- Liu WJ, Chang YS, Wang CH, Kou GH, Lo CF: Microarray and RT-PCR screening for the white spot syndrome virus immediately-early genes in cycloheximide-treated shrimp. Virology 2005, 334: 327-341. 10.1016/j.virol.2005.01.047View ArticlePubMedGoogle Scholar
- Lu L, Kwang J: Identification of a novel shrimp protein phosphatase and its association with latency-related ORF427 of white spot syndrome virus. FEBS Lett 2004, 577: 141-146. 10.1016/j.febslet.2004.08.087View ArticlePubMedGoogle Scholar
- Chen SN, Wang CS: Establishment of cell culture systems from penaeid shrimp and their susceptibility to white spot disease and yellow head viruses. Methods cell sci 1999, 21: 199-206. 10.1023/A:1009885929335View ArticlePubMedGoogle Scholar
- Leisy DJ, Lewis TD, Leong JC, Rohrmann GF: Transduction of cultured fish cells with recombinant baculoviruses. J Gen Virol 2003, 84: 1173-1178. 10.1099/vir.0.18861-0View ArticlePubMedGoogle Scholar
- Chen LL, Wang HC, Huang CJ, Peng SE, Chen YG, Lin SJ, Chen WY, Dai CF, Yu HT, Wang CH, Lo CF, Kou GH: Transcriptional analysis of the DNA polymerase gene of shrimp white spot syndrome virus. Virology 2002, 301: 136-147. 10.1006/viro.2002.1536View ArticlePubMedGoogle Scholar
- van Hulten MCW, Westernberg M, Goodall SD, Vlak JM: Identification of two major virion protein genes of white spot syndrome virus of shrimp. Virology 2000, 266: 227-236. 10.1006/viro.1999.0088View ArticlePubMedGoogle Scholar
- Halford WP, Kemp CD, Isler JA, Davido DJ, Schaffer PA: ICP0, ICP4, or VP16 expressed from adenovirus vectors induces reactivation of latent Herpes Simplex virus type 1 in primary cultures of latently infected trigeminal ganglion cells. J Virol 2001, 75: 6143-6153. 10.1128/JVI.75.13.6143-6153.2001PubMed CentralView ArticlePubMedGoogle Scholar
- Bolle LD, Naesens L, Clercq ED: Update on human Herpesvirus 6 biology, clinical features, and therapy. Clin Micro Rev 2005, 18: 217-245. 10.1128/CMR.18.1.217-245.2005PubMed CentralView ArticlePubMedGoogle Scholar
- Hummel M, Abecassis MM: A model for reactivation of CMV from latency. J Clin Virol 2002, 25: 123-136. 10.1016/S1386-6532(02)00088-4View ArticleGoogle Scholar
- Ruf IK, Moghaddam A, Wang F, Sample J: Mechanisms that regulate Epstein-Barr virus EBNA-1 gene transcription during restricted latency are conserved among lymphocryptoviruses of Old World primates. J Virol 1999, 73: 1980-1989.PubMed CentralPubMedGoogle Scholar
- Kondo K, Shimada K, Sashihara J, Tanaka-Taya K, Yamanishi K: Identification of human herpesvirus 6 latency-associated transcripts. J Virol 2002, 76: 4145-4151. 10.1128/JVI.76.8.4145-4151.2002PubMed CentralView ArticlePubMedGoogle Scholar
- Rotola A, Ravaioli A, Gonelli SD, Cassai E, Di Luca D: U94 of human herpesvirus 6 is expressed in latently infected peripheral blood mononuclear cells and blocks viral gene expression in transformed lymphocytes in culture. Proc Natl Acad Sci USA 1998, 95: 13911-13916. 10.1073/pnas.95.23.13911PubMed CentralView ArticlePubMedGoogle Scholar
- Ammosova T, Jerebtsova M, Beullens M, Voloshin Y, Ray PE, Kumar A, Bollen M, Nekhai S: Nuclear protein phosphatase-1 regulates HIV-1 transcription. J Biol Chem 2003, 278: 32189-32194. 10.1074/jbc.M300521200View ArticlePubMedGoogle Scholar
- Sedarati F, Izumi KM, Wagner EK, Stevens JG: Herpes simplex virus type 1latency-associated transcription plays no role in establishment or maintenance of a latent infection in murine sensory neurons. J Virol 1989, 63: 4455-4458.PubMed CentralPubMedGoogle Scholar
- Shi Z, Wang H., Zhang J, Xie Y, Li L, Chen X, Edgerton BF, Bonami JR: Response of crayfish, procambarus clarkia, haemocytes infected by white spot syndrome virus. J Fish Dis 2005, 28: 151-156. 10.1111/j.1365-2761.2004.00607.xView ArticlePubMedGoogle Scholar
- Kost TA, Condreay JP: Recombinant baculoviruses as mammalian cell gene-delivery vectors. Trends Biotech 2002, 20: 173-180. 10.1016/S0167-7799(01)01911-4View ArticleGoogle Scholar
- Sambrook J, Fritsch EF, Maniatis T: Molecular cloning: a laboratory manual. Edited by: 2. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY; 1989.Google Scholar
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